Variant report
Variant | nsv948803 |
---|---|
Chromosome Location | chr8:47190621-47939976 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3032)
- CpG islands (count:1954)
- Chromatin interactive region (count:64)
- LncRNA region (count:98)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr8:47868491-47869037 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr8:47529231-47529761 | K562 | blood: | n/a | n/a |
3 | ATF1 | chr8:47551373-47551428 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr8:47548283-47548344 | K562 | blood: | n/a | n/a |
5 | ATF1 | chr8:47868616-47868941 | K562 | blood: | n/a | n/a |
6 | ATF1 | chr8:47368426-47368796 | K562 | blood: | n/a | n/a |
7 | ATF1 | chr8:47263663-47264034 | K562 | blood: | n/a | n/a |
8 | ATF2 | chr8:47829248-47829745 | GM12878 | blood: | n/a | n/a |
9 | ATF3 | chr8:47529101-47529363 | K562 | blood: | n/a | n/a |
10 | BACH1 | chr8:47536608-47536724 | K562 | blood: | n/a | n/a |
11 | BACH1 | chr8:47750627-47750683 | H1-hESC | embryonic stem cell: | n/a | n/a |
12 | BACH1 | chr8:47770297-47770313 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | BATF | chr8:47742543-47742780 | GM12878 | blood: | n/a | n/a |
14 | BATF | chr8:47741055-47741204 | GM12878 | blood: | n/a | n/a |
15 | BATF | chr8:47738438-47738681 | GM12878 | blood: | n/a | chr8:47738534-47738545 |
16 | BATF | chr8:47914478-47915014 | GM12878 | blood: | n/a | n/a |
17 | BATF | chr8:47829329-47829717 | GM12878 | blood: | n/a | n/a |
18 | BATF | chr8:47742552-47742702 | GM12878 | blood: | n/a | n/a |
19 | BATF | chr8:47937648-47937953 | GM12878 | blood: | n/a | chr8:47937827-47937835 |
20 | BATF | chr8:47742058-47742352 | GM12878 | blood: | n/a | n/a |
21 | BATF | chr8:47914670-47914951 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr8:47742166-47742315 | GM12878 | blood: | n/a | n/a |
23 | BCL11A | chr8:47937710-47937946 | GM12878 | blood: | n/a | chr8:47937793-47937802 chr8:47937830-47937839 |
24 | BCL11A | chr8:47829333-47829579 | GM12878 | blood: | n/a | chr8:47829442-47829455 chr8:47829439-47829452 chr8:47829438-47829451 |
25 | BCL11A | chr8:47742558-47742696 | GM12878 | blood: | n/a | n/a |
26 | BCL11A | chr8:47741045-47741214 | GM12878 | blood: | n/a | n/a |
27 | BCL11A | chr8:47742493-47742715 | GM12878 | blood: | n/a | n/a |
28 | BCL11A | chr8:47741063-47741196 | GM12878 | blood: | n/a | n/a |
29 | BCL11A | chr8:47829368-47829677 | GM12878 | blood: | n/a | chr8:47829442-47829455 chr8:47829439-47829452 chr8:47829438-47829451 |
30 | BCL11A | chr8:47742173-47742308 | GM12878 | blood: | n/a | n/a |
31 | BCL11A | chr8:47742011-47742327 | GM12878 | blood: | n/a | n/a |
32 | BCLAF1 | chr8:47829316-47829770 | GM12878 | blood: | n/a | chr8:47829442-47829455 chr8:47829439-47829452 chr8:47829438-47829451 |
33 | BCLAF1 | chr8:47829262-47829615 | GM12878 | blood: | n/a | chr8:47829442-47829455 chr8:47829439-47829452 chr8:47829438-47829451 |
34 | BHLHE40 | chr8:47741998-47742438 | HepG2 | liver: | n/a | n/a |
35 | BHLHE40 | chr8:47484595-47485045 | K562 | blood: | n/a | n/a |
36 | BHLHE40 | chr8:47867816-47869101 | GM12878 | blood: | n/a | n/a |
37 | BHLHE40 | chr8:47868720-47869144 | HepG2 | liver: | n/a | n/a |
38 | BHLHE40 | chr8:47424515-47424559 | GM12878 | blood: | n/a | n/a |
39 | BHLHE40 | chr8:47829373-47829808 | K562 | blood: | n/a | chr8:47829733-47829749 chr8:47829460-47829476 |
40 | BHLHE40 | chr8:47570504-47570636 | K562 | blood: | n/a | n/a |
41 | BHLHE40 | chr8:47528443-47529576 | K562 | blood: | n/a | chr8:47528874-47528890 chr8:47529336-47529352 |
42 | BHLHE40 | chr8:47829225-47829768 | GM12878 | blood: | n/a | chr8:47829733-47829749 chr8:47829460-47829476 |
43 | BHLHE40 | chr8:47742538-47742866 | HepG2 | liver: | n/a | n/a |
44 | BHLHE40 | chr8:47741043-47741216 | HepG2 | liver: | n/a | n/a |
45 | BRCA1 | chr8:47829618-47829709 | GM12878 | blood: | n/a | n/a |
46 | BRCA1 | chr8:47829448-47829509 | HepG2 | liver: | n/a | n/a |
47 | BRCA1 | chr8:47828421-47828499 | GM12878 | blood: | n/a | n/a |
48 | BRCA1 | chr8:47213331-47213535 | GM12878 | blood: | n/a | n/a |
49 | CBX3 | chr8:47914528-47915030 | HCT-116 | colon: | n/a | n/a |
50 | CBX3 | chr8:47829309-47829657 | K562 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:47347811-47347861 | ProgFib | skin: | n/a |
2 | chr8:47347811-47347861 | T-47D | breast: | n/a |
3 | chr8:47347811-47347861 | ProgFib | skin: | n/a |
4 | chr8:47347811-47347861 | T-47D | breast: | n/a |
5 | chr8:47751623-47751673 | AG04449 | skin: | fetal |
6 | chr8:47318832-47318882 | Hela-S3 | cervix: | n/a |
7 | chr8:47829660-47829710 | AG04449 | skin: | fetal |
8 | chr8:47862954-47863004 | NHDF-neo | bronchial: | n/a |
9 | chr8:47348070-47348120 | Hela-S3 | cervix: | n/a |
10 | chr8:47526309-47526359 | AG04450 | lung: | fetal |
11 | chr8:47347811-47347861 | NHDF-neo | bronchial: | n/a |
12 | chr8:47829660-47829710 | HIPEpiC | eye: | n/a |
13 | chr8:47527657-47527707 | HPAEpiC | pulmonary alveolar: | n/a |
14 | chr8:47329505-47329555 | HPAEpiC | pulmonary alveolar: | n/a |
15 | chr8:47866659-47866709 | SK-N-MC | brain: | n/a |
16 | chr8:47862954-47863004 | HNPCEpiC | eye: | n/a |
17 | chr8:47751953-47752003 | PrEC | prostate: | n/a |
18 | chr8:47326950-47327000 | SK-N-MC | brain: | n/a |
19 | chr8:47348339-47348389 | SK-N-SH | brain: | n/a |
20 | chr8:47866784-47866834 | HRPEpiC | eye: | n/a |
21 | chr8:47866784-47866834 | HNPCEpiC | eye: | n/a |
22 | chr8:47318883-47318933 | GM12878 | blood: | n/a |
23 | chr8:47866784-47866834 | T-47D | breast: | n/a |
24 | chr8:47829791-47829841 | T-47D | breast: | n/a |
25 | chr8:47866784-47866834 | U87 | brain: | n/a |
26 | chr8:47866183-47866233 | HEK293 | kidney: | embryo |
27 | chr8:47326950-47327000 | SK-N-SH | brain: | n/a |
28 | chr8:47751494-47751544 | Jurkat | blood: | n/a |
29 | chr8:47326950-47327000 | RPTEC | kidney: | n/a |
30 | chr8:47318649-47318699 | ECC-1 | luminal epithelium: | n/a |
31 | chr8:47751494-47751544 | HCPEpiC | choroid plexus: | n/a |
32 | chr8:47529280-47529330 | RPTEC | kidney: | n/a |
33 | chr8:47318832-47318882 | Caco-2 | colon: | n/a |
34 | chr8:47326950-47327000 | HCF | heart: | n/a |
35 | chr8:47348339-47348389 | AG09319 | gingival: | n/a |
36 | chr8:47862954-47863004 | ProgFib | skin: | n/a |
37 | chr8:47344447-47344497 | HAEpiC | amniotic membrane: | n/a |
38 | chr8:47329505-47329555 | GM06990 | blood: | n/a |
39 | chr8:47866183-47866233 | RPTEC | kidney: | n/a |
40 | chr8:47529545-47529595 | SK-N-SH_RA | brain: | n/a |
41 | chr8:47318698-47318748 | Caco-2 | colon: | n/a |
42 | chr8:47318669-47318719 | HCM | heart: | n/a |
43 | chr8:47866784-47866834 | RPTEC | kidney: | n/a |
44 | chr8:47866784-47866834 | NT2-D1 | testis: | n/a |
45 | chr8:47348070-47348120 | A549 | lung: | n/a |
46 | chr8:47869097-47869147 | ProgFib | skin: | n/a |
47 | chr8:47867238-47867288 | PFSK-1 | brain: | n/a |
48 | chr8:47348339-47348389 | BE2_C | brain: | n/a |
49 | chr8:47318698-47318748 | RPTEC | kidney: | n/a |
50 | chr8:47318669-47318719 | RPTEC | kidney: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:46850638..46851140-chr8:47405865..47406365,2 | MCF-7 | breast: | |
2 | chr2:86830620..86831120-chr8:47284541..47285069,2 | MCF-7 | breast: | |
3 | chr8:47829182..47829917-chr8:47868447..47869168,4 | MCF-7 | breast: | |
4 | chr8:47827930..47830534-chr8:47872091..47874048,2 | K562 | blood: | |
5 | chr8:47619682..47620259-chr8:47831736..47832439,2 | MCF-7 | breast: | |
6 | chr8:47924817..47925604-chr8:48105655..48106267,2 | MCF-7 | breast: | |
7 | chr8:47827930..47831126-chr8:47870805..47874048,3 | K562 | blood: | |
8 | chr8:47829182..47829917-chr8:47868447..47869168,4 | MCF-7 | breast: | |
9 | chr8:47827930..47830534-chr8:47872091..47874048,2 | K562 | blood: | |
10 | chr7:97501587..97502366-chr8:47529051..47529557,3 | HCT-116 | colon: | |
11 | chr8:47524927..47529861-chr8:47530508..47536088,6 | K562 | blood: | |
12 | chr8:47168205..47168775-chr8:47479656..47480472,2 | MCF-7 | breast: | |
13 | chr8:47868405..47869388-chr8:48173018..48173532,2 | K562 | blood: | |
14 | chr8:47848954..47851708-chr8:48172110..48173812,2 | MCF-7 | breast: | |
15 | chr8:47144016..47144925-chr8:47484500..47485152,3 | MCF-7 | breast: | |
16 | chr8:47868390..47869335-chr8:48103589..48104192,2 | MCF-7 | breast: | |
17 | chr8:47618307..47619237-chr8:47916938..47917469,2 | MCF-7 | breast: | |
18 | chr8:47889523..47890235-chr8:47912338..47913256,2 | K562 | blood: | |
19 | chr8:47828970..47829945-chr8:47868388..47869115,3 | MCF-7 | breast: | |
20 | chr8:47916930..47917477-chr8:47955693..47956319,2 | MCF-7 | breast: | |
21 | chr8:47528106..47530039-chr8:47536064..47537656,2 | MCF-7 | breast: | |
22 | chr8:47484279..47485112-chr8:47579488..47580411,3 | MCF-7 | breast: | |
23 | chr8:47868349..47869331-chr8:48105662..48106730,3 | MCF-7 | breast: | |
24 | chr8:47152207..47152786-chr8:47399264..47399945,2 | MCF-7 | breast: | |
25 | chr8:47828029..47830858-chr8:47832591..47835013,2 | MCF-7 | breast: | |
26 | chr8:47487702..47490248-chr8:47515594..47517867,2 | K562 | blood: | |
27 | chr8:47491632..47493538-chr8:47505350..47507971,2 | K562 | blood: | |
28 | chr8:47515437..47518605-chr8:47528973..47530959,3 | K562 | blood: | |
29 | chr8:47829086..47829943-chr8:47868391..47869236,3 | K562 | blood: | |
30 | chr8:47619331..47620431-chr8:47868217..47869326,4 | MCF-7 | breast: | |
31 | chr8:47829086..47829943-chr8:47868391..47869236,3 | K562 | blood: | |
32 | chr8:47868367..47869450-chr8:47955570..47956475,5 | MCF-7 | breast: | |
33 | chr8:47864214..47867123-chr8:47867478..47869863,2 | K562 | blood: | |
34 | chr8:47618289..47619061-chr8:47868266..47869014,2 | MCF-7 | breast: | |
35 | chr8:47906924..47909269-chr8:47913683..47915779,2 | K562 | blood: | |
36 | chr8:47864214..47867123-chr8:47867478..47869863,2 | K562 | blood: | |
37 | chr8:47868355..47869368-chr8:48078653..48079520,3 | MCF-7 | breast: | |
38 | chr8:47487702..47490248-chr8:47515594..47517867,2 | K562 | blood: | |
39 | chr8:47506585..47508657-chr8:47510206..47513067,2 | K562 | blood: | |
40 | chr8:47484279..47485112-chr8:47579488..47580411,3 | MCF-7 | breast: | |
41 | chr8:47828970..47829945-chr8:47868388..47869115,3 | MCF-7 | breast: | |
42 | chr8:47619331..47620431-chr8:47868217..47869326,4 | MCF-7 | breast: | |
43 | chr8:47868490..47869263-chr8:48105434..48106345,3 | MCF-7 | breast: | |
44 | chr8:47506585..47508657-chr8:47510206..47513067,2 | K562 | blood: | |
45 | chr8:47868712..47869324-chr8:48091494..48092220,2 | K562 | blood: | |
46 | chr8:47618307..47619237-chr8:47916938..47917469,2 | MCF-7 | breast: | |
47 | chr19:35614212..35616054-chr8:47337776..47339296,2 | MCF-7 | breast: | |
48 | chr7:97495363..97496869-chr8:47517938..47519464,2 | K562 | blood: | |
49 | chr8:47512649..47514644-chr8:47529072..47530746,2 | K562 | blood: | |
50 | chr8:47906924..47909269-chr8:47913683..47915779,2 | K562 | blood: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RP11-1134I14.8.1-3 | chr8:47762290-47762365 | NR_027013 |
2 | lnc-RP11-1134I14.8.1-3 | chr8:47752667-47752748 | ENSG00000253314.1 |
3 | lnc-RP11-1134I14.8.1-3 | chr8:47766092-47766216 | NONHSAT126424 |
4 | lnc-LINC00293-4 | chr8:47460711-47460990 | NONHSAT126406 |
5 | lnc-RP11-1134I14.8.1-3 | chr8:47765729-47765991 | NONHSAT126420 |
6 | lnc-RP11-1134I14.8.1-3 | chr8:47754972-47755048 | ENSG00000253314.1 |
7 | lnc-RP11-1134I14.8.1-3 | chr8:47752497-47752557 | ENSG00000253314.1 |
8 | lnc-RP11-350F16.2.1-1 | chr8:47845800-47846068 | ENSG00000253782.1 |
9 | lnc-RP11-1134I14.8.1-3 | chr8:47762228-47762365 | NONHSAT126424 |
10 | lnc-RP11-1134I14.8.1-3 | chr8:47752508-47752557 | NONHSAT126421 |
11 | lnc-RP11-1134I14.8.1-3 | chr8:47761071-47761815 | NONHSAT126415 |
12 | lnc-RP11-350F16.2.1-4 | chr8:47749200-47750328 | NONHSAT126416 |
13 | lnc-RP11-1134I14.8.1-3 | chr8:47759598-47759722 | NR_027013 |
14 | lnc-LINC00293-4 | chr8:47462233-47462424 | NONHSAT126406 |
15 | lnc-RP11-1134I14.8.1-3 | chr8:47753899-47753974 | ENSG00000253314.1 |
16 | lnc-RP11-1134I14.8.1-3 | chr8:47754972-47755048 | NONHSAT126415 |
17 | lnc-RP11-1134I14.8.1-3 | chr8:47748364-47748420 | ENSG00000253314.1 |
18 | lnc-RP11-350F16.2.1-1 | chr8:47849800-47849870 | l_3587_chr8:47841497-47849870_testes |
19 | lnc-RP11-1134I14.8.1-3 | chr8:47766092-47766220 | NONHSAT126423 |
20 | lnc-RP11-1134I14.8.1-3 | chr8:47752667-47752748 | NR_027013 |
21 | lnc-LINC00293-2 | chr8:47704231-47704686 | NONHSAT126410 |
22 | lnc-RP11-1134I14.8.1-3 | chr8:47760406-47760523 | ENSG00000253314.1 |
23 | lnc-RP11-1134I14.8.1-3 | chr8:47759598-47759631 | ENSG00000253314.1 |
24 | lnc-RP11-1134I14.8.1-3 | chr8:47766092-47766216 | NONHSAT126421 |
25 | lnc-RP11-1134I14.8.1-3 | chr8:47757651-47757703 | NONHSAT126421 |
26 | lnc-RP11-1134I14.8.1-3 | chr8:47762290-47762365 | NONHSAT126423 |
27 | lnc-RP11-350F16.2.1-3 | chr8:47863285-47863520 | NONHSAT126427 |
28 | lnc-RP11-1134I14.8.1-3 | chr8:47757651-47757703 | NONHSAT126419 |
29 | lnc-RP11-1134I14.8.1-3 | chr8:47765729-47765991 | NONHSAT126421 |
30 | lnc-RP11-1134I14.8.1-3 | chr8:47753899-47753974 | ENSG00000253314.1 |
31 | lnc-RP11-350F16.2.1-1 | chr8:47841498-47842473 | l_3587_chr8:47841497-47849870_testes |
32 | lnc-RP11-1134I14.8.1-3 | chr8:47754972-47755048 | NR_027013 |
33 | lnc-RP11-1134I14.8.1-3 | chr8:47757651-47757703 | NR_027013 |
34 | lnc-RP11-1134I14.8.1-3 | chr8:47752438-47752557 | ENSG00000253314.1 |
35 | lnc-RP11-350F16.2.1-3 | chr8:47862330-47862558 | NONHSAT126427 |
36 | lnc-RP11-350F16.2.1-5 | chr8:47738850-47740031 | NONHSAT126413 |
37 | lnc-RP11-1134I14.8.1-3 | chr8:47754972-47755048 | NONHSAT126421 |
38 | lnc-RP11-1134I14.8.1-3 | chr8:47752508-47752557 | NR_027013 |
39 | lnc-RP11-1134I14.8.1-3 | chr8:47762290-47762365 | ENSG00000253314.1 |
40 | lnc-RP11-1134I14.8.1-3 | chr8:47759598-47759722 | NONHSAT126421 |
41 | lnc-RP11-1134I14.8.1-3 | chr8:47752667-47752748 | ENSG00000253314.1 |
42 | lnc-RP11-1134I14.8.1-3 | chr8:47757651-47757703 | ENSG00000253314.1 |
43 | lnc-RP11-1134I14.8.1-3 | chr8:47766386-47767407 | NONHSAT126421 |
44 | lnc-RP11-1134I14.8.1-3 | chr8:47759598-47759722 | NONHSAT126415 |
45 | lnc-RP11-350F16.2.1-1 | chr8:47842942-47843058 | ENSG00000253782.1 |
46 | lnc-RP11-1134I14.8.1-3 | chr8:47760406-47760523 | NONHSAT126421 |
47 | lnc-RP11-1134I14.8.1-3 | chr8:47762290-47762365 | ENSG00000253314.1 |
48 | lnc-RP11-1134I14.8.1-3 | chr8:47762290-47762365 | NONHSAT126421 |
49 | lnc-RP11-1134I14.8.1-3 | chr8:47766386-47766763 | NONHSAT126424 |
50 | lnc-RP11-1134I14.8.1-3 | chr8:47752667-47752748 | NONHSAT126419 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000253782 | TF binding region |
ENSG00000253745 | TF binding region |
HSPA8P13 | TF binding region |
ENSG00000254070 | TF binding region |
MAPK6PS4 | TF binding region |
ASNSP1 | TF binding region |
MTND1P7 | TF binding region |
ENSG00000228984 | TF binding region |
ENSG00000253803 | TF binding region |
MTND6P20 | TF binding region |
TRIM60P15 | TF binding region |
LINC00293 | TF binding region |
RNU6-656P | TF binding region |
ASNSP4 | TF binding region |
ENSG00000254118 | TF binding region |
ENSG00000253782 | CpG island |
ENSG00000253745 | CpG island |
HSPA8P13 | CpG island |
ENSG00000254070 | CpG island |
MAPK6PS4 | CpG island |
ASNSP1 | CpG island |
MTND1P7 | CpG island |
ENSG00000228984 | CpG island |
ENSG00000253803 | CpG island |
MTND6P20 | CpG island |
TRIM60P15 | CpG island |
LINC00293 | CpG island |
RNU6-656P | CpG island |
ASNSP4 | CpG island |
ENSG00000254118 | CpG island |
ENSG00000070669 | chromatin interactions |
ENSG00000164808 | chromatin interactions |
ENSG00000253502 | chromatin interactions |
ENSG00000253745 | chromatin interactions |
ENSG00000248498 | chromatin interactions |
USO1 | miRNA target sites |
PPARGC1A | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs359807 | chr8:47190621-47190622 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
2 | rs550220970 | chr8:47190647-47190648 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs187466051 | chr8:47190661-47190662 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs571477893 | chr8:47190668-47190669 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs538848404 | chr8:47190674-47190675 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs559173178 | chr8:47190699-47190700 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs568001530 | chr8:47190726-47190727 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs548690407 | chr8:47190740-47190741 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs192799040 | chr8:47190778-47190779 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs554624861 | chr8:47190799-47190800 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs568542721 | chr8:47190823-47190824 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs144712646 | chr8:47190832-47190833 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs534431601 | chr8:47190833-47190834 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs138465211 | chr8:47190842-47190843 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs185544251 | chr8:47190849-47190850 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs187869802 | chr8:47190854-47190855 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs359806 | chr8:47190878-47190879 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
18 | rs534756646 | chr8:47190897-47190898 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs149258809 | chr8:47190898-47190899 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs370489980 | chr8:47190916-47190917 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs574775880 | chr8:47190931-47190932 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs377027864 | chr8:47190945-47190946 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs543484027 | chr8:47190947-47190948 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs359805 | chr8:47190948-47190949 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
25 | rs147971657 | chr8:47190963-47190964 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs546133118 | chr8:47190994-47190995 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs192039920 | chr8:47191002-47191003 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs184228011 | chr8:47191019-47191020 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs541942157 | chr8:47191055-47191056 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs574815921 | chr8:47191081-47191082 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs189029666 | chr8:47191101-47191102 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs530510613 | chr8:47191105-47191106 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs192543578 | chr8:47191110-47191111 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs530086872 | chr8:47191111-47191112 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs184912191 | chr8:47191112-47191113 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs564132196 | chr8:47191121-47191122 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs532633827 | chr8:47191136-47191137 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs189127044 | chr8:47191191-47191192 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs143350000 | chr8:47191228-47191229 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs534935859 | chr8:47191247-47191248 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs181063540 | chr8:47191250-47191251 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs80137011 | chr8:47191256-47191257 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs568486107 | chr8:47191281-47191282 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs114350183 | chr8:47191294-47191295 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs557037426 | chr8:47191297-47191298 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs147530922 | chr8:47191309-47191310 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs200542255 | chr8:47191354-47191355 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs553349294 | chr8:47191359-47191360 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs140134842 | chr8:47191363-47191364 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs542080791 | chr8:47191386-47191387 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Cancer | 16751803 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Wilms tumour | 21544195 | CNVD |
Gastric cancer | 17908304 | CNVD |
Melanoma | 18172304 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Autism | 19415332 | CNVD |
Malaria | 21533027 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Breast cancer | 21245420 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Oral cancer | 21386901 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Liver carcinoma | 19366792 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Seminomas | 18059402 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Lung cancer | 18438408 | CNVD |
Pancreatic cancer | 21811587 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Developmental delay | 21373258 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 17603634 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Testicular cancer | 18059402 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Salivary gland tumor | 18059337 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 21509527 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Cancer | 20164919 | CNVD |
primary effusion lymphomas | 17116491 | CNVD |
Esophageal cancer | 20955586 | CNVD |
abnormal development | 18461090 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Cancer | 20164920 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Medulloblastoma | 20607354 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Langer-Giedion syndrome | 22283845 | CNVD |
Cancer | 21637783 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 20632083 | CNVD |
Breast cancer | 19602461 | CNVD |
Cancer | 22429812 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oral cancer | 19627613 | CNVD |
Prostate cancer | 21088497 | CNVD |
colon cancer | 17210682 | CNVD |
Breast cancer | 21264507 | CNVD |
Breast cancer | 22028636 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Breast cancer | 20409316 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Gastric cancer | 17167181 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 16461572 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 16968546 | CNVD |
head and neck squamous cell carcinoma | 18028549 | CNVD |
Breast cancer | 17001317 | CNVD |
Schizophrenia | 20967226 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Autism | 20841430 | CNVD |
Tetralogy of Fallot | 22912587 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:47188200-47190800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
2 | chr8:47190800-47191800 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
3 | chr8:47197600-47205600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
4 | chr8:47198200-47198800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
5 | chr8:47201400-47203200 | ZNF genes & repeats | Liver | Liver |
6 | chr8:47201800-47203600 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
7 | chr8:47202400-47202800 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
8 | chr8:47207200-47210000 | ZNF genes & repeats | Liver | Liver |
9 | chr8:47210800-47219200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
10 | chr8:47216800-47219200 | ZNF genes & repeats | Liver | Liver |
11 | chr8:47217800-47222000 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
12 | chr8:47222000-47224400 | Weak transcription | Liver | Liver |
13 | chr8:47224400-47225800 | ZNF genes & repeats | Liver | Liver |
14 | chr8:47225200-47226800 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
15 | chr8:47227800-47228800 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
16 | chr8:47229400-47230600 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
17 | chr8:47232200-47233800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
18 | chr8:47233000-47235000 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
19 | chr8:47238000-47238200 | ZNF genes & repeats | Fetal Brain Female | brain |
20 | chr8:47238000-47255000 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
21 | chr8:47238600-47242200 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
22 | chr8:47238800-47241400 | ZNF genes & repeats | Fetal Adrenal Gland | Adrenal Gland |
23 | chr8:47239400-47242200 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
24 | chr8:47242800-47251400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
25 | chr8:47245000-47245600 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
26 | chr8:47247200-47250800 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
27 | chr8:47253800-47255400 | ZNF genes & repeats | Adipose Nuclei | Adipose |
28 | chr8:47255400-47255600 | ZNF genes & repeats | Fetal Brain Female | brain |
29 | chr8:47259000-47259400 | Active TSS | Fetal Heart | heart |
30 | chr8:47259200-47259800 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
31 | chr8:47263400-47265200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
32 | chr8:47264600-47265000 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
33 | chr8:47267800-47270200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
34 | chr8:47275400-47280600 | ZNF genes & repeats | Liver | Liver |
35 | chr8:47279800-47280600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
36 | chr8:47285600-47286800 | ZNF genes & repeats | Fetal Muscle Trunk | muscle |
37 | chr8:47285600-47287000 | ZNF genes & repeats | Fetal Stomach | stomach |
38 | chr8:47285600-47288400 | ZNF genes & repeats | Fetal Adrenal Gland | Adrenal Gland |
39 | chr8:47286000-47286200 | ZNF genes & repeats | Fetal Brain Female | brain |
40 | chr8:47286200-47302000 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
41 | chr8:47287200-47287400 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
42 | chr8:47287600-47288200 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
43 | chr8:47290400-47290600 | ZNF genes & repeats | Brain Germinal Matrix | brain |
44 | chr8:47291200-47297200 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
45 | chr8:47292200-47294200 | ZNF genes & repeats | Fetal Muscle Trunk | muscle |
46 | chr8:47292600-47297400 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
47 | chr8:47294600-47294800 | ZNF genes & repeats | Foreskin Keratinocyte Primary Cells skin02 | Skin |
48 | chr8:47295200-47295400 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
49 | chr8:47296200-47296400 | ZNF genes & repeats | Fetal Brain Female | brain |
50 | chr8:47298200-47298800 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |