Variant report
Variant | nsv960155 |
---|---|
Chromosome Location | chr17:15765431-15766496 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs144361853 | chr17:15765445-15765446 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs146701016 | chr17:15765475-15765476 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs538630032 | chr17:15765480-15765481 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs514780 | chr17:15765481-15765482 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs558915002 | chr17:15765517-15765518 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs371019172 | chr17:15765524-15765525 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs373024433 | chr17:15765526-15765527 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs28604277 | chr17:15765530-15765531 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs56256939 | chr17:15765531-15765532 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs577821476 | chr17:15765535-15765536 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs513190 | chr17:15765591-15765592 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
12 | rs58711104 | chr17:15765608-15765609 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs513076 | chr17:15765627-15765628 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs137909713 | chr17:15765630-15765631 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs573861557 | chr17:15765660-15765661 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs71358373 | chr17:15765719-15765720 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs542855866 | chr17:15765776-15765777 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs140659663 | chr17:15765791-15765792 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs531436917 | chr17:15765799-15765800 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs661571 | chr17:15765817-15765818 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs58259296 | chr17:15765839-15765840 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs569892450 | chr17:15765856-15765857 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs564886906 | chr17:15765884-15765885 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs527341867 | chr17:15765925-15765926 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs113643975 | chr17:15765935-15765936 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs547662937 | chr17:15766011-15766012 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs538750409 | chr17:15766067-15766068 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs509405 | chr17:15766070-15766071 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs487494 | chr17:15766099-15766100 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs530198539 | chr17:15766100-15766101 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs72302868 | chr17:15766121-15766122 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs549984636 | chr17:15766168-15766169 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs397832294 | chr17:15766180-15766181 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs397832290 | chr17:15766190-15766191 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs570007152 | chr17:15766231-15766232 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs539134878 | chr17:15766251-15766252 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs535390481 | chr17:15766272-15766273 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs566064289 | chr17:15766349-15766350 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs113268267 | chr17:15766367-15766368 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs149303667 | chr17:15766388-15766389 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs554095330 | chr17:15766407-15766408 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs574002419 | chr17:15766422-15766423 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs571928792 | chr17:15766490-15766491 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Burkitt''s lymphoma | 18698080 | CNVD |
Breast cancer | 17603634 | CNVD |
Melanoma | 18172304 | CNVD |
Glioblastoma multiforme | 19435819 | CNVD |
Non-small cell lung cancer | 19010865 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Hepatocellular carcinoma | 18803288 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
Wilms tumour | 21544195 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Breast cancer | 16608533 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Chordoma | 21602918 | CNVD |
Miller-Dieker syndrome | 22283845 | CNVD |
Non-syndromic sensorineural hearing loss | 17457615 | CNVD |
Cancer | 22429812 | CNVD |
Chronic lymphocytic leukemia | 21795749 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Paraganglioma | 21461997 | CNVD |
Pheochromocytoma | 21461997 | CNVD |
Breast cancer | 22028636 | CNVD |
Breast cancer | 20837533 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Medulloblastoma | 21292688 | CNVD |
colon cancer | 17210682 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Cancer | 16751803 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Embryonal rhabdomyosarcoma | 16790082 | CNVD |
Chronic lymphocytic leukemia | 17971485 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Breast cancer | 16461572 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Breast cancer | 17133270 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Moyamoya disease | 22323933 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Cancer | 20164919 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Acute myeloid leukemia | 20724749 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Acute myeloid leukemia | 17237825 | CNVD |
Colorectal cancer | 21645411 | CNVD |
HIV/AIDS | 22844521 | CNVD |
Psoriasis | 22844521 | CNVD |
Rheumatoid arthritis | 22844521 | CNVD |
Sclerosis systemic | 22844521 | CNVD |
Systemic lupus erythematosus | 22844521 | CNVD |
HIV/AIDS | 17953491 | CNVD |
HIV/AIDS | 20877625 | CNVD |
Immune disease | 21076436 | CNVD |
Rheumatoid arthritis | 17953491 | CNVD |
Type 1 diabetes | 17953491 | CNVD |
HIV/AIDS | 15637236 | CNVD |
Prostate cancer | 18632612 | CNVD |
Lung cancer | 18438408 | CNVD |
Ovarian cancer | 21781307 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Neurofibromatosis | 18196300 | CNVD |
Adenoid cystic carcinoma | 18332873 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Pancreatic cancer | 21811587 | CNVD |
Autism | 17322880 | CNVD |
Hereditary neuropathy with liability to pressure palsy | 19521722 | CNVD |
Schizophrenia | 19571808 | CNVD |
Schizophrenia | 19955444 | CNVD |
Charcot-marie-tooth disease | 18787571 | CNVD |
Breast cancer | 20409316 | CNVD |
Autism | 18414403 | CNVD |
Breast cancer | 17001317 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Peripheral neuropathy | 21193943 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 22958593 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Barrett''s adenocarcinoma | 18663352 | CNVD |
Charcot-marie-tooth disease | 16463004 | CNVD |
Osteosarcoma | 22292074 | CNVD |
Charcot | 16760730 | CNVD |
Mental retardation | 17901693 | CNVD |
ovarian endometriomas | 16273235 | CNVD |
Breast cancer | 21858162 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Breast cancer | 17142309 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Autism | 22102821 | CNVD |
Gastric cancer | 18160780 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:15765400-15773800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |