Variant report
Variant | nsv960261 |
---|---|
Chromosome Location | chr18:14669634-14709748 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs559122683 | chr18:14692834-14692835 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs533537860 | chr18:14692872-14692873 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs553859931 | chr18:14692896-14692897 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs573675249 | chr18:14692899-14692900 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs536310095 | chr18:14692936-14692937 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs28850603 | chr18:14692988-14692989 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs4017926 | chr18:14692996-14692997 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs4017927 | chr18:14693007-14693008 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs575829697 | chr18:14693013-14693014 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs544943136 | chr18:14693057-14693058 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs564823393 | chr18:14693058-14693059 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs572435763 | chr18:14693059-14693060 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs541091099 | chr18:14693070-14693071 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs71364821 | chr18:14693100-14693101 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs530144171 | chr18:14693163-14693164 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs550249024 | chr18:14693192-14693193 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs4017928 | chr18:14693197-14693198 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
18 | rs532739648 | chr18:14693198-14693199 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs2919923 | chr18:14693204-14693205 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs563262590 | chr18:14693214-14693215 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs191823133 | chr18:14693228-14693229 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs183898493 | chr18:14693240-14693241 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs2919925 | chr18:14693243-14693244 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs28558801 | chr18:14693275-14693276 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
25 | rs189730567 | chr18:14693384-14693385 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs547092229 | chr18:14693392-14693393 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs28484888 | chr18:14693393-14693394 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
28 | rs192931725 | chr18:14693428-14693429 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs555831966 | chr18:14693451-14693452 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs374139193 | chr18:14693459-14693460 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs12954284 | chr18:14693473-14693474 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs185101099 | chr18:14693495-14693496 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs190577750 | chr18:14693541-14693542 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs558692153 | chr18:14693563-14693564 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs1809837 | chr18:14693572-14693573 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs572268768 | chr18:14693596-14693597 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs541281324 | chr18:14693637-14693638 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs561126696 | chr18:14693647-14693648 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs1782910 | chr18:14693664-14693665 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs1782887 | chr18:14693694-14693695 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs143377899 | chr18:14693730-14693731 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs181900961 | chr18:14693808-14693809 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs563754059 | chr18:14693809-14693810 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs532781232 | chr18:14693813-14693814 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs552825834 | chr18:14693820-14693821 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs1782911 | chr18:14693825-14693826 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs559861446 | chr18:14693845-14693846 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs528790322 | chr18:14693869-14693870 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs376643100 | chr18:14693873-14693874 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs567192897 | chr18:14693937-14693938 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Chronic lymphocytic leukemia | 21546498 | CNVD |
Intellectual disability | 22102821 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Seminomas | 18059402 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Cancer | 21183584 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Melanoma | 18172304 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Colorectal cancer | 19150955 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Trisomy 18 syndrome | 17576883 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Multiple myeloma | 17550852 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Breast cancer | 21364760 | CNVD |
Heart disease | 21282601 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Acute myeloid leukemia | 17377590 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 16620391 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Glioma | 17123091 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Cancer | 20164919 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr18:14692800-14694200 | Enhancers | Placenta | Placenta |
2 | chr18:14697200-14697600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |