Variant report

Variant	nsv960374
Chromosome Location	chr16:76169884-76180870
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:76170732..76173663-chr16:76174703..76177407,2	MCF-7	breast:
2	chr16:76167106..76169562-chr16:76172402..76175397,2	MCF-7	breast:
3	chr16:76170732..76173663-chr16:76174703..76177407,2	MCF-7	breast:
4	chr16:76165281..76167806-chr16:76168616..76171411,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC025287.1-2	chr16:76170020-76170263	ENSG00000260223.1
2	lnc-AC025287.1-2	chr16:76174260-76174301	ENSG00000260223.1

No data

Extended variants
information (count: 501 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:501 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190509042	chr16:76169895-76169896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs115054445	chr16:76169897-76169898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs150830275	chr16:76169902-76169903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs545881092	chr16:76169918-76169919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556297266	chr16:76169935-76169936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs182272822	chr16:76169944-76169945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537753008	chr16:76169961-76169962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs554709900	chr16:76170023-76170024	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs370531421	chr16:76170040-76170041	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs574283946	chr16:76170043-76170044	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs2288059	chr16:76170096-76170097	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs367925565	chr16:76170110-76170111	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs201157380	chr16:76170122-76170123	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs372015646	chr16:76170138-76170139	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs566350451	chr16:76170181-76170182	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs139740721	chr16:76170188-76170189	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs376301685	chr16:76170198-76170199	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs370032761	chr16:76170200-76170201	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs186003774	chr16:76170238-76170239	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs190971899	chr16:76170266-76170267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570569872	chr16:76170335-76170336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561300804	chr16:76170348-76170349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs562450346	chr16:76170359-76170360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs17698541	chr16:76170362-76170363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs542518730	chr16:76170385-76170386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs562208371	chr16:76170387-76170388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs11646015	chr16:76170398-76170399	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs570922604	chr16:76170446-76170447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs533486998	chr16:76170468-76170469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs76185579	chr16:76170470-76170471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs550631845	chr16:76170477-76170478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs16943890	chr16:76170483-76170484	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs535239192	chr16:76170489-76170490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs554565787	chr16:76170493-76170494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531734275	chr16:76170509-76170510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111631242	chr16:76170541-76170542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs368872142	chr16:76170552-76170553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs181170448	chr16:76170562-76170563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185306229	chr16:76170563-76170564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs190119721	chr16:76170630-76170631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs533108121	chr16:76170645-76170646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs556262002	chr16:76170669-76170670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575943276	chr16:76170677-76170678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs182782440	chr16:76170681-76170682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs562352032	chr16:76170733-76170734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs555243561	chr16:76170748-76170749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs146600459	chr16:76170814-76170815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs564672923	chr16:76170831-76170832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565239857	chr16:76170845-76170846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs150757402	chr16:76170847-76170848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD
Breast cancer	20409316	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76158200-76181400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:76171400-76172000	Enhancers	Placenta	Placenta
3	chr16:76174000-76176200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:76174200-76174600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr16:76174200-76175400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr16:76174400-76175800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr16:76175000-76175800	Enhancers	Brain Hippocampus Middle	brain
8	chr16:76175200-76175600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr16:76175200-76175800	Enhancers	Brain Substantia Nigra	brain
10	chr16:76176600-76176800	Enhancers	Brain Angular Gyrus	brain
11	chr16:76179400-76179600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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