Variant report

Variant	nsv960808
Chromosome Location	chr19:21019086-21030051
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF626-4	chr19:21022210-21022336	NONHSAT063675
2	lnc-ZNF626-4	chr19:21021321-21021373	NONHSAT063675

Extended variants
information (count: 337 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:337 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188805857	chr19:21019087-21019088	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs150343598	chr19:21019099-21019100	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs193063405	chr19:21019204-21019205	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs548573690	chr19:21019220-21019221	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs34250382	chr19:21019233-21019234	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs376327538	chr19:21019248-21019249	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs369442658	chr19:21019253-21019254	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs531125513	chr19:21019259-21019260	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs551136671	chr19:21019307-21019308	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs570984810	chr19:21019328-21019329	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs539936718	chr19:21019335-21019336	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs142184323	chr19:21019338-21019339	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs566977114	chr19:21019339-21019340	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs422367	chr19:21019346-21019347	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs555818171	chr19:21019358-21019359	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs145841386	chr19:21019362-21019363	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs537781308	chr19:21019391-21019392	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs185040236	chr19:21019393-21019394	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs113025981	chr19:21019405-21019406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs142675760	chr19:21019421-21019422	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559770390	chr19:21019445-21019446	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573425126	chr19:21019457-21019458	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs190280894	chr19:21019483-21019484	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs181927117	chr19:21019492-21019493	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs531213209	chr19:21019493-21019494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375322149	chr19:21019519-21019520	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564690250	chr19:21019548-21019549	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs533522276	chr19:21019593-21019594	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs59977060	chr19:21019613-21019614	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs377534	chr19:21019620-21019621	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs56938867	chr19:21019659-21019660	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs12978988	chr19:21019670-21019671	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs569204367	chr19:21019739-21019740	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186446305	chr19:21019746-21019747	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs557727832	chr19:21019760-21019761	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs571212504	chr19:21019788-21019789	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200287103	chr19:21019797-21019798	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs188126388	chr19:21019801-21019802	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs533711379	chr19:21019815-21019816	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs572081044	chr19:21019819-21019820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553567018	chr19:21019821-21019822	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs73926455	chr19:21019869-21019870	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs542340730	chr19:21019882-21019883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs180977412	chr19:21019887-21019888	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs577870769	chr19:21019922-21019923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs575995027	chr19:21019957-21019958	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs544995694	chr19:21019998-21019999	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs564575085	chr19:21020042-21020043	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs185387201	chr19:21020049-21020050	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs113927076	chr19:21020057-21020058	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Schizophrenia	20967226	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21009200-21021600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:21019000-21020000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:21019200-21020000	ZNF genes & repeats	Ovary	ovary
4	chr19:21019200-21020200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:21019400-21024800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:21019600-21020200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:21020000-21021600	Weak transcription	Ovary	ovary
8	chr19:21020800-21024200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:21021000-21021400	ZNF genes & repeats	Fetal Brain Female	brain
10	chr19:21021600-21021800	ZNF genes & repeats	Ovary	ovary
11	chr19:21022400-21024000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr19:21022600-21023400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr19:21022600-21024000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr19:21022800-21024000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr19:21023000-21023200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr19:21023000-21023600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr19:21029800-21031000	ZNF genes & repeats	Adipose Nuclei	Adipose

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