Variant report

Variant	nsv960832
Chromosome Location	chr19:37519841-37553181
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF568-1	chr19:37551031-37551086	NONHSAT066064
2	lnc-ZNF568-1	chr19:37551893-37552190	NONHSAT066064

Extended variants
information (count: 764 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:764 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556922148	chr19:37521216-37521217	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs2254217	chr19:37521217-37521218	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs140026777	chr19:37521254-37521255	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs34891013	chr19:37521265-37521266	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs565324928	chr19:37521273-37521274	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs561438833	chr19:37521341-37521342	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs78915820	chr19:37521354-37521355	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs555629817	chr19:37521358-37521359	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs573971974	chr19:37521359-37521360	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs199658161	chr19:37521393-37521394	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs147623707	chr19:37521506-37521507	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs562905574	chr19:37521533-37521534	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs149079408	chr19:37521545-37521546	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs545311761	chr19:37521549-37521550	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs183512480	chr19:37521617-37521618	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs533053353	chr19:37521671-37521672	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs371869051	chr19:37521693-37521694	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs540649340	chr19:37521697-37521698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs187894291	chr19:37521766-37521767	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs546665665	chr19:37521773-37521774	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs142233086	chr19:37521793-37521794	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs565552413	chr19:37521794-37521795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs532884990	chr19:37521817-37521818	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs544804238	chr19:37521840-37521841	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs528984487	chr19:37521909-37521910	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs550276181	chr19:37521916-37521917	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs13346284	chr19:37521946-37521947	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs530628389	chr19:37521947-37521948	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs112325779	chr19:37522010-37522011	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs34688455	chr19:37522069-37522070	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs548755354	chr19:37522081-37522082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs551730617	chr19:37522132-37522133	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs566672295	chr19:37522163-37522164	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs10414107	chr19:37522193-37522194	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs555546596	chr19:37522207-37522208	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs191593861	chr19:37522259-37522260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs2562607	chr19:37522260-37522261	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs556251833	chr19:37522282-37522283	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs183837283	chr19:37522370-37522371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs545291871	chr19:37522396-37522397	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs192667376	chr19:37527220-37527221	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs140778225	chr19:37527251-37527252	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs59430381	chr19:37527285-37527286	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs7245520	chr19:37527318-37527319	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs35522655	chr19:37527356-37527357	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs112614261	chr19:37527368-37527369	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs369433786	chr19:37527369-37527370	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs553041783	chr19:37527432-37527433	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs574567544	chr19:37527471-37527472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs73623598	chr19:37527626-37527627	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21240255	CNVD

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37521200-37521400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr19:37521200-37522400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37527200-37529800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:37527800-37529200	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:37528200-37528600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr19:37528200-37528800	ZNF genes & repeats	Ovary	ovary
7	chr19:37529200-37529400	ZNF genes & repeats	Fetal Brain Male	brain
8	chr19:37529600-37529800	ZNF genes & repeats	Left Ventricle	heart
9	chr19:37529800-37535000	Weak transcription	Left Ventricle	heart
10	chr19:37535000-37535400	ZNF genes & repeats	Left Ventricle	heart
11	chr19:37535200-37538000	Weak transcription	Ovary	ovary
12	chr19:37535400-37538200	Weak transcription	Left Ventricle	heart
13	chr19:37538200-37538400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr19:37538200-37538400	ZNF genes & repeats	Left Ventricle	heart
15	chr19:37538400-37538600	Weak transcription	Left Ventricle	heart
16	chr19:37545000-37550200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
17	chr19:37545800-37551600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr19:37546200-37548000	ZNF genes & repeats	Pancreas	Pancrea
19	chr19:37546200-37549600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr19:37546200-37550800	ZNF genes & repeats	Spleen	Spleen
21	chr19:37546200-37552400	ZNF genes & repeats	Liver	Liver
22	chr19:37546400-37551800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr19:37546400-37552400	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr19:37546600-37548200	ZNF genes & repeats	Gastric	stomach
25	chr19:37546800-37550000	ZNF genes & repeats	Fetal Lung	lung
26	chr19:37546800-37551400	ZNF genes & repeats	Fetal Stomach	stomach
27	chr19:37547000-37547200	Enhancers	Right Ventricle	heart
28	chr19:37547000-37547600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr19:37547000-37548400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr19:37547200-37547800	Weak transcription	Right Ventricle	heart
31	chr19:37547200-37551000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr19:37547400-37551200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr19:37547600-37548800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
34	chr19:37547800-37549200	Strong transcription	Right Ventricle	heart
35	chr19:37547800-37551800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr19:37548000-37548400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
37	chr19:37548600-37549000	ZNF genes & repeats	Ovary	ovary
38	chr19:37548600-37551400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
39	chr19:37548600-37551800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr19:37549000-37549200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
41	chr19:37549200-37553200	Weak transcription	Right Ventricle	heart
42	chr19:37549200-37560200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr19:37549600-37551400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr19:37549600-37551800	ZNF genes & repeats	Pancreas	Pancrea
45	chr19:37549800-37550400	ZNF genes & repeats	Gastric	stomach
46	chr19:37549800-37550600	ZNF genes & repeats	Placenta	Placenta
47	chr19:37550800-37551600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
48	chr19:37550800-37552200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chr19:37551600-37568200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr19:37552200-37556200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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