Variant report

Variant	nsv960888
Chromosome Location	chr19:37539063-37553181
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF568-1	chr19:37551893-37552190	NONHSAT066064
2	lnc-ZNF568-1	chr19:37551031-37551086	NONHSAT066064

Extended variants
information (count: 336 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:336 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200310313	chr19:37545029-37545030	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs548942271	chr19:37545036-37545037	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs567584191	chr19:37545038-37545039	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs181554680	chr19:37545062-37545063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs148032318	chr19:37545102-37545103	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs141807295	chr19:37545103-37545104	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs538825896	chr19:37545115-37545116	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs117591523	chr19:37545117-37545118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs186268475	chr19:37545173-37545174	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs12462623	chr19:37545201-37545202	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs372434236	chr19:37545202-37545203	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs6510583	chr19:37545206-37545207	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs12462629	chr19:37545266-37545267	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs544197549	chr19:37545267-37545268	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs556141851	chr19:37545299-37545300	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs138681040	chr19:37545373-37545374	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs372933136	chr19:37545378-37545379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs544776844	chr19:37545379-37545380	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs8112903	chr19:37545386-37545387	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs558586787	chr19:37545387-37545388	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs369189940	chr19:37545412-37545413	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs147381390	chr19:37545425-37545426	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs561329063	chr19:37545449-37545450	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs139118152	chr19:37545450-37545451	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs567810297	chr19:37545489-37545490	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs535231425	chr19:37545490-37545491	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs532887004	chr19:37545521-37545522	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs547995699	chr19:37545523-37545524	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs183004440	chr19:37545525-37545526	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs377031763	chr19:37545591-37545592	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs2011475	chr19:37545614-37545615	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs548755330	chr19:37545689-37545690	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs567362760	chr19:37545704-37545705	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs538263761	chr19:37545772-37545773	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs537408551	chr19:37545773-37545774	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs185937383	chr19:37545861-37545862	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs539410575	chr19:37545885-37545886	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs35169397	chr19:37545897-37545898	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs139525408	chr19:37545910-37545911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs149481252	chr19:37545936-37545937	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs577835729	chr19:37545937-37545938	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs538578101	chr19:37545970-37545971	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs77385827	chr19:37545978-37545979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs76380511	chr19:37545979-37545980	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs191047065	chr19:37546098-37546099	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs376033445	chr19:37546189-37546190	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs373781685	chr19:37546192-37546193	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs183282560	chr19:37546199-37546200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs557504883	chr19:37546203-37546204	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs576505670	chr19:37546231-37546232	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21240255	CNVD

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37545000-37550200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr19:37545800-37551600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:37546200-37548000	ZNF genes & repeats	Pancreas	Pancrea
4	chr19:37546200-37549600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr19:37546200-37550800	ZNF genes & repeats	Spleen	Spleen
6	chr19:37546200-37552400	ZNF genes & repeats	Liver	Liver
7	chr19:37546400-37551800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:37546400-37552400	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:37546600-37548200	ZNF genes & repeats	Gastric	stomach
10	chr19:37546800-37550000	ZNF genes & repeats	Fetal Lung	lung
11	chr19:37546800-37551400	ZNF genes & repeats	Fetal Stomach	stomach
12	chr19:37547000-37547200	Enhancers	Right Ventricle	heart
13	chr19:37547000-37547600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr19:37547000-37548400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr19:37547200-37547800	Weak transcription	Right Ventricle	heart
16	chr19:37547200-37551000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr19:37547400-37551200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr19:37547600-37548800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
19	chr19:37547800-37549200	Strong transcription	Right Ventricle	heart
20	chr19:37547800-37551800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr19:37548000-37548400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
22	chr19:37548600-37549000	ZNF genes & repeats	Ovary	ovary
23	chr19:37548600-37551400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
24	chr19:37548600-37551800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:37549000-37549200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
26	chr19:37549200-37553200	Weak transcription	Right Ventricle	heart
27	chr19:37549200-37560200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr19:37549600-37551400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr19:37549600-37551800	ZNF genes & repeats	Pancreas	Pancrea
30	chr19:37549800-37550400	ZNF genes & repeats	Gastric	stomach
31	chr19:37549800-37550600	ZNF genes & repeats	Placenta	Placenta
32	chr19:37550800-37551600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:37550800-37552200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
34	chr19:37551600-37568200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr19:37552200-37556200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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