Variant report
Variant | nsv961074 |
---|---|
Chromosome Location | chr18:14804855-14806423 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs9303865 | chr18:14804949-14804950 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs575508435 | chr18:14804997-14804998 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs181154103 | chr18:14805012-14805013 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs180677289 | chr18:14805022-14805023 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs542233238 | chr18:14805025-14805026 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs562620878 | chr18:14805078-14805079 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs531292275 | chr18:14805083-14805084 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs544833400 | chr18:14805115-14805116 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs564735207 | chr18:14805123-14805124 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs186741540 | chr18:14805132-14805133 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs547679819 | chr18:14805241-14805242 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs4075383 | chr18:14805252-14805253 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs530122108 | chr18:14805272-14805273 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs9748313 | chr18:14805287-14805288 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
15 | rs191154320 | chr18:14805288-14805289 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs539131445 | chr18:14805307-14805308 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs552842304 | chr18:14805341-14805342 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs183808901 | chr18:14805375-14805376 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs9748320 | chr18:14805376-14805377 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
20 | rs555262918 | chr18:14805378-14805379 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs575000303 | chr18:14805385-14805386 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs561390494 | chr18:14805393-14805394 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs528816096 | chr18:14805400-14805401 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs368222742 | chr18:14805424-14805425 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs555719725 | chr18:14805428-14805429 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs575782268 | chr18:14805441-14805442 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs188301722 | chr18:14805494-14805495 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs374124763 | chr18:14805524-14805525 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs553082162 | chr18:14805527-14805528 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs572209118 | chr18:14805589-14805590 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs190536500 | chr18:14805611-14805612 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs561270102 | chr18:14805613-14805614 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs183448631 | chr18:14805616-14805617 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs367937385 | chr18:14805625-14805626 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs550195060 | chr18:14805663-14805664 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs150014541 | chr18:14805726-14805727 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs532507294 | chr18:14805743-14805744 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs552705040 | chr18:14805805-14805806 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs566148481 | chr18:14805806-14805807 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs535239599 | chr18:14805810-14805811 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs548481936 | chr18:14805812-14805813 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs568765001 | chr18:14805904-14805905 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs537343505 | chr18:14805947-14805948 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs565528452 | chr18:14805956-14805957 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs575643782 | chr18:14805985-14805986 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs187725518 | chr18:14805995-14805996 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs558252801 | chr18:14805998-14805999 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs191447161 | chr18:14806013-14806014 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs541247183 | chr18:14806036-14806037 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs560923397 | chr18:14806045-14806046 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Chronic lymphocytic leukemia | 21546498 | CNVD |
Intellectual disability | 22102821 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Seminomas | 18059402 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Cancer | 21183584 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Melanoma | 18172304 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Colorectal cancer | 19150955 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Trisomy 18 syndrome | 17576883 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Multiple myeloma | 17550852 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Breast cancer | 21364760 | CNVD |
Heart disease | 21282601 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Acute myeloid leukemia | 17377590 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 16620391 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Glioma | 17123091 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr18:14798200-14817600 | Weak transcription | Osteobl | bone |
2 | chr18:14799000-14817600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |