Variant report

Variant	nsv961157
Chromosome Location	chr19:23071132-23087740
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF730-4	chr19:23083412-23083590	NONHSAT063828
2	lnc-ZNF730-4	chr19:23083412-23083590	NONHSAT063827
3	lnc-ZNF99-1	chr19:23086798-23087004	XLOC_013270

Extended variants
information (count: 205 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:205 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560559771	chr19:23078628-23078629	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs139721776	chr19:23078685-23078686	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs75279664	chr19:23078688-23078689	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs564865538	chr19:23078691-23078692	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs386808024	chr19:23078708-23078709	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs550940677	chr19:23078709-23078710	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs192765450	chr19:23078737-23078738	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs530338986	chr19:23078739-23078740	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs145235906	chr19:23078768-23078769	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs371741140	chr19:23078780-23078781	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs10604001	chr19:23078781-23078782	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs72481628	chr19:23078782-23078783	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs566891773	chr19:23078798-23078799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs534249447	chr19:23078817-23078818	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs72540855	chr19:23078826-23078827	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs11421053	chr19:23078827-23078828	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs144173842	chr19:23078828-23078829	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs552686636	chr19:23078849-23078850	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs74209525	chr19:23078864-23078865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs190041442	chr19:23078880-23078881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs556916951	chr19:23078895-23078896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs575454708	chr19:23078898-23078899	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs536144083	chr19:23078907-23078908	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs62122462	chr19:23078933-23078934	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs572490767	chr19:23078942-23078943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs140786814	chr19:23079053-23079054	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs564989790	chr19:23079066-23079067	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs62122463	chr19:23079072-23079073	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs192547019	chr19:23079077-23079078	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs35794935	chr19:23079166-23079167	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs79574054	chr19:23079190-23079191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs530391990	chr19:23079191-23079192	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs548912994	chr19:23079220-23079221	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs62122464	chr19:23079221-23079222	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs149689234	chr19:23079243-23079244	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs184375931	chr19:23079266-23079267	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs62122465	chr19:23079270-23079271	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs537962801	chr19:23079285-23079286	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs188812198	chr19:23079329-23079330	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs181953700	chr19:23079350-23079351	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs62122466	chr19:23079353-23079354	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs375381143	chr19:23079359-23079360	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs554423156	chr19:23079362-23079363	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs572848754	chr19:23079378-23079379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs71357960	chr19:23079385-23079386	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs553653236	chr19:23079389-23079390	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs567158251	chr19:23079394-23079395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs55887985	chr19:23079398-23079399	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs138881637	chr19:23079402-23079403	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs71357961	chr19:23079405-23079406	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	23813976	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23078600-23080200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr19:23082200-23083600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:23082800-23085000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:23083800-23084800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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