Variant report

Variant	nsv961203
Chromosome Location	chr19:24287356-24321180
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:24309408..24311273-chr19:24321594..24323328,2	MCF-7	breast:
2	chr19:24269735..24271787-chr19:24289462..24293668,3	MCF-7	breast:
3	chr19:24269939..24272519-chr19:24310930..24313655,2	K562	blood:
4	chr19:24278737..24281409-chr19:24289986..24291875,2	K562	blood:
5	chr19:24269211..24271747-chr19:24290443..24293090,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF726-3	chr19:24286988-24290154	NONHSAT063958

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZNF254	hsa-miR-155-5p	chr19:24311154-24311177
2	ZNF254	hsa-miR-155-5p	chr19:24312469-24312491

Variant related genes	Relation type
ENSG00000213096	chromatin interactions

Extended variants
information (count: 1616 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:1616 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147839109	chr19:24287376-24287377	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs559105078	chr19:24287391-24287392	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs183649743	chr19:24287408-24287409	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs568800705	chr19:24287507-24287508	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs536089350	chr19:24287566-24287567	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs572541127	chr19:24287611-24287612	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs547606644	chr19:24287665-24287666	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs556128042	chr19:24287726-24287727	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs554296477	chr19:24287826-24287827	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs148903464	chr19:24287881-24287882	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs188929951	chr19:24287882-24287883	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs558546922	chr19:24287956-24287957	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs576792848	chr19:24287983-24287984	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs544181483	chr19:24288006-24288007	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs556938882	chr19:24288012-24288013	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs190920913	chr19:24288037-24288038	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs542448277	chr19:24288042-24288043	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs560631887	chr19:24288043-24288044	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs372150333	chr19:24288162-24288163	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs535757493	chr19:24288168-24288169	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs564587017	chr19:24288201-24288202	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs73524137	chr19:24288261-24288262	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs554642841	chr19:24288291-24288292	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs557144995	chr19:24288361-24288362	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs374886329	chr19:24288398-24288399	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs183066452	chr19:24288435-24288436	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs549761201	chr19:24288496-24288497	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs376264634	chr19:24288521-24288522	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs112176406	chr19:24288568-24288569	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs529897294	chr19:24288597-24288598	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs547997460	chr19:24288604-24288605	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs563585148	chr19:24288621-24288622	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs35666047	chr19:24288634-24288635	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs566520676	chr19:24288657-24288658	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs116173718	chr19:24288680-24288681	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs558404110	chr19:24288684-24288685	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs570519189	chr19:24288691-24288692	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs545949677	chr19:24288698-24288699	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs371595132	chr19:24288699-24288700	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs368956538	chr19:24288719-24288720	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs537890285	chr19:24288729-24288730	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs377404087	chr19:24288753-24288754	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs559044218	chr19:24288758-24288759	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs186726580	chr19:24288779-24288780	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs386808211	chr19:24288795-24288796	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs370343484	chr19:24288806-24288807	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs575223550	chr19:24288810-24288811	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs373530352	chr19:24288814-24288815	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs368728416	chr19:24288834-24288835	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs373470812	chr19:24288879-24288880	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1142 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24270600-24289200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr19:24270600-24290600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:24270600-24290600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:24270600-24290600	Weak transcription	Gastric	stomach
5	chr19:24270600-24290600	Weak transcription	Pancreas	Pancrea
6	chr19:24270600-24290600	Weak transcription	Spleen	Spleen
7	chr19:24270600-24296200	Weak transcription	Stomach Mucosa	stomach
8	chr19:24270800-24289400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr19:24270800-24289400	Weak transcription	Ovary	ovary
10	chr19:24270800-24289400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr19:24270800-24290600	Weak transcription	Aorta	Aorta
12	chr19:24270800-24290600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr19:24270800-24291000	Weak transcription	Psoas Muscle	Psoas
14	chr19:24270800-24291400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr19:24271000-24289000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr19:24271000-24289200	Weak transcription	Placenta	Placenta
17	chr19:24271000-24290800	Weak transcription	Right Ventricle	heart
18	chr19:24271200-24289200	Weak transcription	Colon Smooth Muscle	Colon
19	chr19:24271200-24289200	Weak transcription	NH-A	brain
20	chr19:24271200-24289600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr19:24271200-24300200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:24271400-24288200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr19:24271400-24288400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr19:24271400-24289400	Weak transcription	Colonic Mucosa	Colon
25	chr19:24271400-24290600	Weak transcription	Hela-S3	cervix
26	chr19:24271400-24292400	Weak transcription	NHEK	skin
27	chr19:24271400-24295000	Weak transcription	HMEC	breast
28	chr19:24271400-24301400	Weak transcription	HSMMtube	muscle
29	chr19:24271400-24308600	Weak transcription	K562	blood
30	chr19:24271600-24289400	Weak transcription	Small Intestine	intestine
31	chr19:24271800-24287400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr19:24271800-24289400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr19:24273600-24287600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr19:24275200-24294000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr19:24275800-24290600	Weak transcription	Fetal Thymus	thymus
36	chr19:24276000-24289400	Weak transcription	Fetal Brain Male	brain
37	chr19:24277000-24288400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr19:24279200-24289200	Weak transcription	Fetal Stomach	stomach
39	chr19:24279400-24290600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr19:24280800-24293800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr19:24281000-24290600	Weak transcription	HepG2	liver
42	chr19:24281200-24289000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr19:24281400-24291200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
44	chr19:24281800-24287600	Strong transcription	Dnd41	blood
45	chr19:24281800-24293000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr19:24282000-24291800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr19:24282000-24292600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr19:24282200-24288800	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr19:24282200-24293000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr19:24282400-24288400	Weak transcription	NHDF-Ad	bronchial

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