Variant report
| Variant | nsv961423 |
|---|---|
| Chromosome Location | chr2:78176545-78186041 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-LRRTM4-2 | chr2:78176532-78176551 | XLOC_002173 |
| 2 | lnc-LRRTM4-2 | chr2:78178164-78178621 | XLOC_002173 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CELF2 | miRNA target sites |
Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs182765666 | chr2:78176548-78176549 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs6547170 | chr2:78178166-78178167 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs112426263 | chr2:78178169-78178170 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs370505369 | chr2:78178197-78178198 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs541643895 | chr2:78178213-78178214 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs577380700 | chr2:78178218-78178219 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs559298481 | chr2:78178253-78178254 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs538004917 | chr2:78178272-78178273 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs528269824 | chr2:78178275-78178276 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs189952005 | chr2:78178287-78178288 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs562009534 | chr2:78178313-78178314 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs139752456 | chr2:78178336-78178337 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs144448810 | chr2:78178340-78178341 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs570484610 | chr2:78178350-78178351 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs1527191 | chr2:78178365-78178366 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 16 | rs542295843 | chr2:78178369-78178370 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs547056278 | chr2:78178437-78178438 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs530237064 | chr2:78178444-78178445 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs566979737 | chr2:78178449-78178450 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs10170706 | chr2:78178455-78178456 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 21 | rs555827357 | chr2:78178491-78178492 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 22 | rs377347143 | chr2:78178499-78178500 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 23 | rs10170630 | chr2:78178531-78178532 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 24 | rs538491317 | chr2:78178600-78178601 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:57)
| Disease | PMID | Source |
|---|---|---|
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Ovarian neoplasms | 16753589 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Adrenal tumor | 17535989 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Medulloblastoma | 17522785 | CNVD |
| Cancer | 23418310 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Ependymoma | 16718352 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Cancer | 20164919 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Autism | 17483303 | CNVD |
| Myofibroblastic sarcoma | 19369631 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Esophageal adenocarcinoma | 18519675 | CNVD |
| Medulloblastoma | 20607354 | CNVD |
| Autism | 22495311 | CNVD |
| Autism | 18522746 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cancer | 16751803 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Seminomas | 18059402 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Myeloproliferative neoplasm | 20015882 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Mental retardation | 17124404 | CNVD |
| Basal cell lymphoma | 19029149 | CNVD |
| Diffuse large b-cell lymphoma | 19029149 | CNVD |
| Cancer | 17440070 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Attention deficit hyperactivity disorder | 21324949 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Epilepsy | 22083797 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| Schizophrenia | 23813976 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
