Variant report
Variant | nsv962559 |
---|---|
Chromosome Location | chr20:14571137-14571851 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs553455179 | chr20:14571220-14571221 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs565691356 | chr20:14571228-14571229 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs539491756 | chr20:14571230-14571231 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs557894169 | chr20:14571273-14571274 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs576245669 | chr20:14571282-14571283 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs6105299 | chr20:14571296-14571297 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs555565019 | chr20:14571299-14571300 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs180846229 | chr20:14571310-14571311 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs6110343 | chr20:14571325-14571326 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs569864514 | chr20:14571344-14571345 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs143583514 | chr20:14571377-14571378 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs533161329 | chr20:14571382-14571383 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs142399770 | chr20:14571446-14571447 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs6110344 | chr20:14571563-14571564 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs563436878 | chr20:14571564-14571565 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs560594684 | chr20:14571565-14571566 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs6110345 | chr20:14571578-14571579 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs6079502 | chr20:14571644-14571645 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
19 | rs549294053 | chr20:14571652-14571653 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs546813721 | chr20:14571658-14571659 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs567863157 | chr20:14571666-14571667 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs528751761 | chr20:14571685-14571686 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs77686665 | chr20:14571710-14571711 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs139882799 | chr20:14571713-14571714 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs369273051 | chr20:14571740-14571741 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs565638552 | chr20:14571770-14571771 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs539432875 | chr20:14571792-14571793 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs557834796 | chr20:14571818-14571819 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Breast cancer | 16397240 | CNVD |
abortions and stillbirths | 19751515 | CNVD |
Wilms tumour | 21544195 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 16272173 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 19627613 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 16751803 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Central neurocytomas | 17123091 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Colorectal cancer | 21645411 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Autism | 22495311 | CNVD |
Glaucoma | 21310917 | CNVD |
Alagille syndrome | 22470819 | CNVD |
Lung cancer | 16773561 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Alagille syndrome | 17576883 | CNVD |
Anaplastic large cell lymphoma | 18179710 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ewing''s sarcoma | 18628472 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Leukemia | 18628472 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Kabuki syndrome | 21720541 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Neurocytoma | 17123091 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Cancer | 20164919 | CNVD |
Multiple sclerosis | 20663923 | CNVD |
Schizophrenia | 20663923 | CNVD |
brain infarct | 20663923 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 17142309 | CNVD |
Cancer | 20164920 | CNVD |
Schizophrenia | 23813976 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Autism | 20531469 | CNVD |
Breast cancer | 21364760 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:14570600-14577400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |