Variant report

Variant	nsv962691
Chromosome Location	chr21:15312718-15314009
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LIPI-4	chr21:15313136-15313299	NONHSAT081132
2	lnc-LIPI-4	chr21:15313136-15313299	NONHSAT081131

Extended variants
information (count: 116 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:116 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183319373	chr21:15312733-15312734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs34364069	chr21:15312737-15312738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs188674145	chr21:15312760-15312761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs193081996	chr21:15312763-15312764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs71330942	chr21:15312788-15312789	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs13051139	chr21:15312794-15312795	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs545263246	chr21:15312797-15312798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs34161644	chr21:15312799-15312800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs546385219	chr21:15312827-15312828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs146566411	chr21:15312828-15312829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35686667	chr21:15312835-15312836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184236183	chr21:15312857-15312858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs199906094	chr21:15312858-15312859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs561206459	chr21:15312880-15312881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs34196894	chr21:15312885-15312886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs530238457	chr21:15312903-15312904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs35530699	chr21:15312922-15312923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543574045	chr21:15312935-15312936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs34850525	chr21:15312952-15312953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs113474533	chr21:15312986-15312987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs563639946	chr21:15313004-15313005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532558237	chr21:15313014-15313015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs34061023	chr21:15313018-15313019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs34976486	chr21:15313027-15313028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370498738	chr21:15313050-15313051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs551654943	chr21:15313067-15313068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs373448383	chr21:15313079-15313080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113577767	chr21:15313080-15313081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs67506729	chr21:15313088-15313089	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs529499866	chr21:15313109-15313110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547605212	chr21:15313118-15313119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs2989278	chr21:15313121-15313122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs567228058	chr21:15313130-15313131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs62209690	chr21:15313133-15313134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs376338687	chr21:15313140-15313141	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs62209691	chr21:15313141-15313142	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs370177184	chr21:15313156-15313157	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs373636111	chr21:15313164-15313165	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs368087190	chr21:15313168-15313169	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs371796012	chr21:15313169-15313170	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs374687417	chr21:15313177-15313178	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs368492516	chr21:15313180-15313181	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs76767858	chr21:15313192-15313193	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs372224305	chr21:15313224-15313225	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs2822278	chr21:15313244-15313245	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs371652617	chr21:15313245-15313246	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs549141660	chr21:15313252-15313253	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs556004499	chr21:15313261-15313262	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs199841997	chr21:15313278-15313279	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs2905893	chr21:15313295-15313296	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Down syndrome	17412756	CNVD
Down syndrome	17576883	CNVD
Acute promyelocytic leukemia	19109227	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
T-cell lymphomas	19863542	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Renal cell carcinoma	19461508	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Metanephric adenoma	20802469	CNVD
Neuroblastoma	18923191	CNVD
Prostate cancer	19156837	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
lymphocytic leukemia	21291569	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute myeloid leukemia	21251322	CNVD
abnormal development	18461090	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Melanoma	17363583	CNVD
Breast cancer	22522925	CNVD
Multiple myeloma	17550852	CNVD
Myelofibrosis	22110671	CNVD
Alzheimer''s disease	18923514	CNVD
Alzheimer''s disease	20877625	CNVD
Follicular lymphoma	20505157	CNVD
Alzheimer''s disease	21956041	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Melanoma	18172304	CNVD
Autism	22958593	CNVD
Schizophrenia	22958593	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15309000-15314000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr21:15310400-15347400	Weak transcription	Dnd41	blood

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