Variant report

Variant	nsv962694
Chromosome Location	chr21:15322205-15325613
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LIPI-4	chr21:15323553-15323581	NONHSAT081132
2	lnc-LIPI-4	chr21:15323388-15323460	NONHSAT081131
3	lnc-LIPI-4	chr21:15323553-15323581	NONHSAT081131
4	lnc-LIPI-4	chr21:15323553-15323581	NONHSAT081133
5	lnc-LIPI-4	chr21:15323388-15323460	NONHSAT081133
6	lnc-LIPI-4	chr21:15323388-15323460	NONHSAT081132

Extended variants
information (count: 180 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:180 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369109022	chr21:15322225-15322226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs2822298	chr21:15322249-15322250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565236269	chr21:15322278-15322279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs558663883	chr21:15322282-15322283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs34926726	chr21:15322308-15322309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs188939893	chr21:15322309-15322310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs193098043	chr21:15322351-15322352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549166772	chr21:15322359-15322360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs373793361	chr21:15322370-15322371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569096819	chr21:15322373-15322374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs552092726	chr21:15322413-15322414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs537901283	chr21:15322414-15322415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs424355	chr21:15322517-15322518	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs571213762	chr21:15322528-15322529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs145912942	chr21:15322573-15322574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs554022654	chr21:15322603-15322604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs184277184	chr21:15322605-15322606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs369674532	chr21:15322640-15322641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs556309724	chr21:15322652-15322653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs201877261	chr21:15322665-15322666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs576562461	chr21:15322675-15322676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs543744965	chr21:15322685-15322686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs565436898	chr21:15322746-15322747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs563536599	chr21:15322760-15322761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs138816892	chr21:15322772-15322773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs149388952	chr21:15322773-15322774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs143697159	chr21:15322778-15322779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs35996623	chr21:15322805-15322806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs35845219	chr21:15322818-15322819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs34249611	chr21:15322826-15322827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs35679529	chr21:15322830-15322831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs148095547	chr21:15322831-15322832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs549303402	chr21:15322834-15322835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs2822302	chr21:15322836-15322837	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs531448031	chr21:15322842-15322843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs35341251	chr21:15322850-15322851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs565407027	chr21:15322863-15322864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs34676145	chr21:15322873-15322874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs551454404	chr21:15322905-15322906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs34488541	chr21:15322906-15322907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs141823549	chr21:15322908-15322909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs34651951	chr21:15322919-15322920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs527263713	chr21:15322943-15322944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs377671515	chr21:15322951-15322952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs546953961	chr21:15322970-15322971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs35178297	chr21:15322994-15322995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs146160467	chr21:15322995-15322996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs142154977	chr21:15323067-15323068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556448245	chr21:15323089-15323090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs192827987	chr21:15323112-15323113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Down syndrome	17412756	CNVD
Down syndrome	17576883	CNVD
Acute promyelocytic leukemia	19109227	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
T-cell lymphomas	19863542	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Renal cell carcinoma	19461508	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Metanephric adenoma	20802469	CNVD
Neuroblastoma	18923191	CNVD
Prostate cancer	19156837	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
lymphocytic leukemia	21291569	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute myeloid leukemia	21251322	CNVD
abnormal development	18461090	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Melanoma	17363583	CNVD
Breast cancer	22522925	CNVD
Multiple myeloma	17550852	CNVD
Myelofibrosis	22110671	CNVD
Alzheimer''s disease	18923514	CNVD
Alzheimer''s disease	20877625	CNVD
Follicular lymphoma	20505157	CNVD
Alzheimer''s disease	21956041	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Melanoma	18172304	CNVD
Autism	22958593	CNVD
Schizophrenia	22958593	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15310400-15347400	Weak transcription	Dnd41	blood

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