Variant report

Variant	nsv963044
Chromosome Location	chr19:37893588-37916743
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF527-3	chr19:37893254-37893658	NONHSAT066110
2	lnc-ZNF527-3	chr19:37894123-37894480	NONHSAT066110
3	lnc-ZNF569-2	chr19:37892306-37894748	NONHSAT066109

Extended variants
information (count: 772 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:772 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142373125	chr19:37893589-37893590	ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
2	rs377539399	chr19:37893617-37893618	ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
3	rs568793575	chr19:37893657-37893658	ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
4	rs200485077	chr19:37893683-37893684	ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
5	rs533078820	chr19:37893760-37893761	ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
6	rs551650337	chr19:37893768-37893769	ZNF genes & repeats Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
7	rs566713731	chr19:37893843-37893844	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
8	rs191082215	chr19:37893905-37893906	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
9	rs151268191	chr19:37893920-37893921	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
10	rs140331567	chr19:37893961-37893962	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
11	rs376288495	chr19:37894005-37894006	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
12	rs538305060	chr19:37894018-37894019	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
13	rs149921421	chr19:37894038-37894039	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
14	rs183212511	chr19:37894071-37894072	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs187227104	chr19:37894080-37894081	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs554037124	chr19:37894160-37894161	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
17	rs572341579	chr19:37894190-37894191	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs10420430	chr19:37894194-37894195	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs146522946	chr19:37894231-37894232	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs10422074	chr19:37894236-37894237	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs34924806	chr19:37894242-37894243	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs190804029	chr19:37894245-37894246	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
23	rs562388339	chr19:37894254-37894255	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
24	rs371334708	chr19:37894310-37894311	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
25	rs182657855	chr19:37894366-37894367	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
26	rs79960839	chr19:37894392-37894393	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
27	rs188106763	chr19:37894395-37894396	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
28	rs141065508	chr19:37894400-37894401	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
29	rs569523138	chr19:37894409-37894410	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
30	rs73631027	chr19:37894444-37894445	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs10422527	chr19:37894468-37894469	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs567393677	chr19:37894473-37894474	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
33	rs571592013	chr19:37894507-37894508	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
34	rs35303727	chr19:37894524-37894525	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
35	rs112707248	chr19:37894531-37894532	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
36	rs34007428	chr19:37894545-37894546	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
37	rs539010092	chr19:37894546-37894547	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
38	rs191694071	chr19:37894553-37894554	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
39	rs572428954	chr19:37894565-37894566	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
40	rs536514879	chr19:37894580-37894581	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
41	rs144609123	chr19:37894584-37894585	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
42	rs34423627	chr19:37894602-37894603	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
43	rs138547535	chr19:37894634-37894635	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
44	rs34075113	chr19:37894653-37894654	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
45	rs544013337	chr19:37894657-37894658	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
46	rs572344476	chr19:37894664-37894665	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
47	rs562584580	chr19:37894681-37894682	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
48	rs57883436	chr19:37894736-37894737	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs545043785	chr19:37894748-37894749	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
50	rs373829587	chr19:37894770-37894771	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:541 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37884600-37896800	ZNF genes & repeats	Liver	Liver
2	chr19:37887800-37896800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:37892200-37896600	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:37892400-37893800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:37892400-37895200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
6	chr19:37892600-37895000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:37893200-37893800	Active TSS	Colon Smooth Muscle	Colon
8	chr19:37893200-37895000	ZNF genes & repeats	Pancreas	Pancrea
9	chr19:37893800-37894800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr19:37893800-37894800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr19:37894000-37894400	ZNF genes & repeats	Brain Anterior Caudate	brain
12	chr19:37894000-37895000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:37894000-37895000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr19:37894000-37895000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
15	chr19:37896200-37896600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr19:37896400-37896600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
17	chr19:37896600-37898000	Weak transcription	Adipose Nuclei	Adipose
18	chr19:37896800-37898000	Weak transcription	Liver	Liver
19	chr19:37896800-37898000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr19:37898000-37910000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr19:37898000-37910400	ZNF genes & repeats	Adipose Nuclei	Adipose
22	chr19:37898000-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
24	chr19:37898200-37899000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
25	chr19:37898200-37899400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr19:37898200-37900400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
27	chr19:37898200-37901200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr19:37898400-37901000	ZNF genes & repeats	Brain Anterior Caudate	brain
29	chr19:37898600-37901200	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr19:37898600-37902000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr19:37898600-37906200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
32	chr19:37898800-37899200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr19:37898800-37899200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
34	chr19:37899000-37899200	ZNF genes & repeats	Brain Angular Gyrus	brain
35	chr19:37899200-37918800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr19:37900200-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr19:37900400-37906000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr19:37900600-37901600	ZNF genes & repeats	Right Atrium	heart
39	chr19:37901200-37901400	ZNF genes & repeats	Ovary	ovary
40	chr19:37901400-37903400	Weak transcription	Ovary	ovary
41	chr19:37901600-37903200	Weak transcription	Right Atrium	heart
42	chr19:37901600-37903400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr19:37902000-37906000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
44	chr19:37902200-37906000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr19:37902400-37905400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
46	chr19:37902400-37905400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
47	chr19:37902400-37905400	ZNF genes & repeats	Brain Substantia Nigra	brain
48	chr19:37902400-37905600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr19:37902400-37910000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr19:37902600-37905400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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