Variant report

Variant	nsv963267
Chromosome Location	chr3:85565975-85566834
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12487474	chr3:85566023-85566024	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs369661367	chr3:85566058-85566059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs549561565	chr3:85566064-85566065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs2122236	chr3:85566088-85566089	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs529429872	chr3:85566091-85566092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs143980635	chr3:85566113-85566114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189184354	chr3:85566167-85566168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs566172075	chr3:85566173-85566174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs540136353	chr3:85566199-85566200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs528308088	chr3:85566209-85566210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs144385698	chr3:85566253-85566254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547779411	chr3:85566338-85566339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs140205944	chr3:85566406-85566407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs570026134	chr3:85566413-85566414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs377291032	chr3:85566446-85566447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs537445723	chr3:85566516-85566517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs547976746	chr3:85566574-85566575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs555552056	chr3:85566615-85566616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs114795611	chr3:85566618-85566619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs534834470	chr3:85566694-85566695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs141110549	chr3:85566761-85566762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs180697902	chr3:85566789-85566790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs571949622	chr3:85566808-85566809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Prostate cancer	21307934	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85545000-85569000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85558200-85566800	Weak transcription	K562	blood

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