Variant report

Variant	nsv963282
Chromosome Location	chr3:156736833-156742169
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:162 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547919516	chr3:156736897-156736898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs6779199	chr3:156736901-156736902	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs536325666	chr3:156736995-156736996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs554566764	chr3:156737007-156737008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs193151752	chr3:156737010-156737011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs533384496	chr3:156737048-156737049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs377482076	chr3:156737135-156737136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs34390196	chr3:156737161-156737162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs138366068	chr3:156737173-156737174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs183635326	chr3:156737220-156737221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs367773287	chr3:156737230-156737231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558977507	chr3:156737254-156737255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs528836057	chr3:156737262-156737263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs187244777	chr3:156737263-156737264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs57791022	chr3:156737317-156737318	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs111843216	chr3:156737333-156737334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs372567957	chr3:156737382-156737383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570137337	chr3:156737389-156737390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs541906464	chr3:156737402-156737403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs375531049	chr3:156737411-156737412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs563732494	chr3:156737553-156737554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs530810040	chr3:156737619-156737620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113734423	chr3:156737628-156737629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs565043186	chr3:156737697-156737698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376269648	chr3:156737699-156737700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368253973	chr3:156737714-156737715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547636373	chr3:156737724-156737725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs143921488	chr3:156737758-156737759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs559428566	chr3:156737804-156737805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs368642041	chr3:156737883-156737884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529842834	chr3:156737901-156737902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs537780268	chr3:156737912-156737913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs549263060	chr3:156737921-156737922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs547975983	chr3:156737928-156737929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs147234551	chr3:156737945-156737946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs139276879	chr3:156738044-156738045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs113288265	chr3:156738047-156738048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs60360054	chr3:156738084-156738085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs536651348	chr3:156738159-156738160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558478644	chr3:156738184-156738185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs9756110	chr3:156738187-156738188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs188611756	chr3:156738191-156738192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs553182668	chr3:156738216-156738217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192667714	chr3:156738267-156738268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs60275122	chr3:156738272-156738273	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs57202263	chr3:156738311-156738312	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs557167846	chr3:156738314-156738315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs371727889	chr3:156738323-156738324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs575656612	chr3:156738325-156738326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs150586786	chr3:156738328-156738329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Cancer	17440070	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21611746	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156715600-156743600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156735400-156740800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:156739800-156740000	Enhancers	Aorta	Aorta
4	chr3:156740600-156741800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:156740800-156741600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:156740800-156742000	Enhancers	Fetal Stomach	stomach
7	chr3:156741000-156741400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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