Variant report

Variant	nsv963321
Chromosome Location	chr3:52434961-52438226
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:124)
CpG islands
(count:122)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:124 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr3:52434513-52434975	K562	blood:	n/a	n/a
2	CTCF	chr3:52436720-52436870	NHEK	skin:	n/a	n/a
3	ELF1	chr3:52435580-52435908	GM12878	blood:	n/a	n/a
4	FOXA1	chr3:52435770-52436056	T-47D	breast:	n/a	n/a
5	FOXA1	chr3:52435786-52436002	T-47D	breast:	n/a	n/a
6	GATA1	chr3:52433608-52434998	PBDE	blood:	n/a	chr3:52434144-52434152
7	POLR2A	chr3:52431172-52435151	GM12892	blood:	n/a	n/a
8	POLR2A	chr3:52437140-52437265	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr3:52437353-52437427	MCF-7	breast:	n/a	n/a
10	POLR2A	chr3:52435735-52435777	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr3:52434654-52435114	HCT-116	colon:	n/a	n/a
12	POLR2A	chr3:52437266-52437541	GM12891	blood:	n/a	n/a
13	POLR2A	chr3:52433592-52434969	GM12878	blood:	n/a	n/a
14	POLR2A	chr3:52437050-52437156	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr3:52437171-52437439	K562	blood:	n/a	n/a
16	POLR2A	chr3:52431026-52435816	GM12878	blood:	n/a	n/a
17	POLR2A	chr3:52437201-52437228	HepG2	liver:	n/a	n/a
18	POLR2A	chr3:52432485-52435727	GM12891	blood:	n/a	n/a
19	POLR2A	chr3:52432869-52435068	SK-N-SH	brain:	n/a	n/a
20	POLR2A	chr3:52436690-52436781	MCF10A-Er-Src	breast:	n/a	n/a
21	POLR2A	chr3:52437124-52437607	K562	blood:	n/a	n/a
22	POLR2A	chr3:52436139-52436537	GM12891	blood:	n/a	n/a
23	POLR2A	chr3:52434430-52435417	HepG2	liver:	n/a	n/a
24	POLR2A	chr3:52435521-52436255	HL-60	blood:	n/a	n/a
25	POLR2A	chr3:52435032-52435191	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr3:52436059-52436150	HepG2	liver:	n/a	n/a
27	POLR2A	chr3:52437089-52437383	GM12892	blood:	n/a	n/a
28	POLR2A	chr3:52435166-52435918	GM12892	blood:	n/a	n/a
29	POLR2A	chr3:52434419-52435001	K562	blood:	n/a	n/a
30	POLR2A	chr3:52432691-52435060	K562	blood:	n/a	n/a
31	POLR2A	chr3:52438033-52438308	K562	blood:	n/a	n/a
32	POLR2A	chr3:52435191-52435391	HepG2	liver:	n/a	n/a
33	POLR2A	chr3:52435035-52435479	GM12878	blood:	n/a	n/a
34	POLR2A	chr3:52434668-52435037	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr3:52432609-52435083	PANC-1	pancreas:	n/a	n/a
36	POLR2A	chr3:52434988-52435103	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr3:52432583-52435739	K562	blood:	n/a	n/a
38	POLR2A	chr3:52432650-52435145	PBDE	blood:	n/a	n/a
39	POLR2A	chr3:52432604-52435096	MCF10A-Er-Src	breast:	n/a	n/a
40	POLR2A	chr3:52430938-52435537	MCF10A-Er-Src	breast:	n/a	n/a
41	POLR2A	chr3:52432577-52435408	PFSK-1	brain:	n/a	n/a
42	POLR2A	chr3:52437388-52437656	GM12878	blood:	n/a	n/a
43	POLR2A	chr3:52437219-52437738	GM12892	blood:	n/a	n/a
44	POLR2A	chr3:52435383-52435477	HUVEC	blood vessel:	n/a	n/a
45	POLR2A	chr3:52434700-52434999	GM12891	blood:	n/a	n/a
46	POLR2A	chr3:52435123-52435772	GM12891	blood:	n/a	n/a
47	POLR2A	chr3:52436003-52436006	HepG2	liver:	n/a	n/a
48	POLR2A	chr3:52436206-52436557	GM12878	blood:	n/a	n/a
49	POLR2A	chr3:52436899-52437682	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr3:52437764-52437909	GM12878	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:52436356-52436406	Caco-2	colon:	n/a
2	chr3:52435298-52435348	HRPEpiC	eye:	n/a
3	chr3:52435298-52435348	NT2-D1	testis:	n/a
4	chr3:52436356-52436406	A549	lung:	n/a
5	chr3:52435298-52435348	SK-N-SH_RA	brain:	n/a
6	chr3:52435298-52435348	SK-N-SH	brain:	n/a
7	chr3:52436356-52436406	RPTEC	kidney:	n/a
8	chr3:52436356-52436406	Jurkat	blood:	n/a
9	chr3:52435298-52435348	CMK	blood:	n/a
10	chr3:52435298-52435348	BE2_C	brain:	n/a
11	chr3:52436356-52436406	ECC-1	luminal epithelium:	n/a
12	chr3:52435298-52435348	SAEC	small airway:	n/a
13	chr3:52435298-52435348	HNPCEpiC	eye:	n/a
14	chr3:52435298-52435348	NHDF-neo	bronchial:	n/a
15	chr3:52435298-52435348	AG09319	gingival:	n/a
16	chr3:52436356-52436406	T-47D	breast:	n/a
17	chr3:52436356-52436406	IMR90	lung:	fetal
18	chr3:52435298-52435348	U87	brain:	n/a
19	chr3:52436356-52436406	AG04449	skin:	fetal
20	chr3:52436356-52436406	SK-N-SH	brain:	n/a
21	chr3:52435298-52435348	ECC-1	luminal epithelium:	n/a
22	chr3:52436356-52436406	HL-60	blood:	n/a
23	chr3:52436356-52436406	AoSMC	blood vessel:	n/a
24	chr3:52436356-52436406	HCM	heart:	n/a
25	chr3:52435298-52435348	A549	lung:	n/a
26	chr3:52435298-52435348	GM12878	blood:	n/a
27	chr3:52436356-52436406	HepG2	liver:	n/a
28	chr3:52435298-52435348	IMR90	lung:	fetal
29	chr3:52436356-52436406	NHDF-neo	bronchial:	n/a
30	chr3:52435298-52435348	H1-hESC	embryonic stem cell:	embryo
31	chr3:52435298-52435348	AG09309	skin:	n/a
32	chr3:52435298-52435348	K562	blood:	n/a
33	chr3:52435298-52435348	HEK293	kidney:	embryo
34	chr3:52435298-52435348	BJ	skin:	n/a
35	chr3:52436356-52436406	NT2-D1	testis:	n/a
36	chr3:52435298-52435348	T-47D	breast:	n/a
37	chr3:52435298-52435348	HCM	heart:	n/a
38	chr3:52436356-52436406	AG09309	skin:	n/a
39	chr3:52435298-52435348	HUVEC	blood vessel:	n/a
40	chr3:52435298-52435348	HCPEpiC	choroid plexus:	n/a
41	chr3:52436356-52436406	HMEC	breast:	n/a
42	chr3:52435298-52435348	GM19239	blood:	n/a
43	chr3:52436356-52436406	SAEC	small airway:	n/a
44	chr3:52436356-52436406	ProgFib	skin:	n/a
45	chr3:52436356-52436406	K562	blood:	n/a
46	chr3:52435298-52435348	LNCaP	prostate:	n/a
47	chr3:52435298-52435348	NHBE	bronchial:	n/a
48	chr3:52436356-52436406	HEK293	kidney:	embryo
49	chr3:52435298-52435348	HEEpiC	esophagus:	n/a
50	chr3:52435298-52435348	GM12891	blood:	n/a

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52424863..52429708-chr3:52432804..52436017,4	MCF-7	breast:
2	chr3:52435154..52438907-chr3:52439834..52442973,4	MCF-7	breast:
3	chr3:52433460..52436241-chr3:52446322..52448131,2	K562	blood:
4	chr3:52420073..52422449-chr3:52434521..52436360,2	K562	blood:
5	chr3:52433533..52435348-chr3:52441662..52443180,2	MCF-7	breast:
6	chr3:52320927..52323255-chr3:52435150..52437326,2	K562	blood:
7	chr3:52435594..52437407-chr3:52437551..52439169,2	MCF-7	breast:

No data

Variant related genes	Relation type
BAP1	TF binding region
BAP1	CpG island
ENSG00000168237	chromatin interactions
ENSG00000010318	chromatin interactions
ENSG00000163930	chromatin interactions
ENSG00000114841	chromatin interactions
ENSG00000164091	chromatin interactions

Extended variants
information (count: 163 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:163 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs498946	chr3:52434967-52434968	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs184301292	chr3:52434994-52434995	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs371792984	chr3:52435013-52435014	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs563691773	chr3:52435079-52435080	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs376927338	chr3:52435140-52435141	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs15213	chr3:52435166-52435167	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs529221016	chr3:52435231-52435232	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
8	rs576101332	chr3:52435232-52435233	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs200090991	chr3:52435250-52435251	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs143765918	chr3:52435255-52435256	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
11	rs564784996	chr3:52435265-52435266	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
12	rs9855479	chr3:52435330-52435331	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs148164249	chr3:52435367-52435368	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
14	rs189636868	chr3:52435386-52435387	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs529884488	chr3:52435396-52435397	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
16	rs1802229	chr3:52435467-52435468	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
17	rs549658929	chr3:52435477-52435478	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
18	rs569662579	chr3:52435491-52435492	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
19	rs541976213	chr3:52435494-52435495	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
20	rs560014343	chr3:52435496-52435497	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
21	rs538601619	chr3:52435509-52435510	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs527360846	chr3:52435537-52435538	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs552163608	chr3:52435538-52435539	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs566007468	chr3:52435544-52435545	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs535094246	chr3:52435629-52435630	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs554798397	chr3:52435658-52435659	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs374367093	chr3:52435661-52435662	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
28	rs112184821	chr3:52435665-52435666	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs537688492	chr3:52435675-52435676	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs144145384	chr3:52435731-52435732	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs123598	chr3:52435860-52435861	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs146324979	chr3:52435863-52435864	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs564915243	chr3:52435864-52435865	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs371640811	chr3:52435865-52435866	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
35	rs571975248	chr3:52435893-52435894	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
36	rs112026686	chr3:52435912-52435913	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
37	rs143014714	chr3:52435919-52435920	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
38	rs367760798	chr3:52435938-52435939	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
39	rs370476271	chr3:52435976-52435977	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
40	rs150842955	chr3:52436004-52436005	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
41	rs543217779	chr3:52436040-52436041	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs563202696	chr3:52436049-52436050	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs532291548	chr3:52436128-52436129	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs552215966	chr3:52436144-52436145	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs181133421	chr3:52436149-52436150	Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs564062251	chr3:52436244-52436245	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs56898787	chr3:52436259-52436260	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs139307137	chr3:52436267-52436268	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs375252451	chr3:52436268-52436269	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs201122466	chr3:52436376-52436377	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	16397240	CNVD
Breast cancer	22032731	CNVD
Non-small cell lung cancer	20864512	CNVD
Colorectal cancer	16912164	CNVD
Non-small cell lung cancer	19010865	CNVD
Colorectal cancer	16272173	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21785460	CNVD
Neuroblastoma	17327916	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Bladder cancer	21909424	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Septo-optic dysplasia	21572526	CNVD
Biliary cancer	19435499	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
Ventriculomegaly	21325761	CNVD
Breast cancer	16608533	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Lung cancer	16618734	CNVD
Neuroblastoma	19686582	CNVD
Renal cell carcinoma	18765545	CNVD
Adrenocortical carcinoma	18281524	CNVD

Chromatin state (count:194 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52395000-52443200	Weak transcription	Right Atrium	heart
2	chr3:52408000-52436600	Weak transcription	Fetal Kidney	kidney
3	chr3:52410600-52435400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:52414000-52435400	Weak transcription	Fetal Lung	lung
5	chr3:52418600-52442200	Strong transcription	Fetal Intestine Small	intestine
6	chr3:52418800-52441800	Strong transcription	Brain Anterior Caudate	brain
7	chr3:52419000-52441800	Strong transcription	Liver	Liver
8	chr3:52419000-52442000	Strong transcription	Brain Hippocampus Middle	brain
9	chr3:52419000-52442600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:52419200-52435400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:52419200-52441600	Strong transcription	Fetal Stomach	stomach
12	chr3:52419200-52441800	Strong transcription	Brain Angular Gyrus	brain
13	chr3:52419200-52442000	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr3:52419600-52435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:52420000-52442000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:52420200-52442400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:52420200-52442400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:52420200-52442600	Strong transcription	Fetal Intestine Large	intestine
19	chr3:52422600-52441800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:52425600-52442000	Strong transcription	Spleen	Spleen
21	chr3:52426200-52436000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:52426600-52442200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:52427800-52436000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:52428800-52435200	Weak transcription	Pancreas	Pancrea
25	chr3:52430000-52442400	Strong transcription	Brain Substantia Nigra	brain
26	chr3:52430200-52442000	Strong transcription	Primary T cells from cord blood	blood
27	chr3:52430800-52442600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr3:52430800-52442600	Strong transcription	Brain Cingulate Gyrus	brain
29	chr3:52431000-52441600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr3:52431200-52435000	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr3:52431200-52437200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr3:52431800-52435600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:52431800-52437800	Strong transcription	Adipose Nuclei	Adipose
34	chr3:52431800-52440800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:52432000-52435000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:52432000-52442400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:52432200-52440400	Strong transcription	Primary B cells from cord blood	blood
38	chr3:52432200-52442400	Strong transcription	Lung	lung
39	chr3:52432600-52435400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:52432600-52439600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:52432600-52442200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr3:52432800-52436200	Strong transcription	Placenta	Placenta
43	chr3:52432800-52436600	Weak transcription	NH-A	brain
44	chr3:52432800-52437200	Strong transcription	Fetal Muscle Leg	muscle
45	chr3:52432800-52437800	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:52432800-52437800	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr3:52432800-52441800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:52432800-52442000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:52432800-52442000	Strong transcription	Fetal Thymus	thymus
50	chr3:52432800-52442200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links