Variant report

Variant	nsv963345
Chromosome Location	chr3:98030842-98031666
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR5H6-1	chr3:98030730-98030852	ENSG00000251088.1

Extended variants
information (count: 43 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs62270683	chr3:98030869-98030870	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs112780438	chr3:98030881-98030882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565008621	chr3:98030897-98030898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs564448547	chr3:98030927-98030928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs112884437	chr3:98030961-98030962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs533064483	chr3:98030967-98030968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs532262414	chr3:98030990-98030991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549778984	chr3:98031057-98031058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs180808829	chr3:98031062-98031063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535551886	chr3:98031109-98031110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs13076085	chr3:98031113-98031114	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs565775005	chr3:98031118-98031119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74387973	chr3:98031120-98031121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs4325958	chr3:98031148-98031149	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs72937135	chr3:98031183-98031184	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs150399946	chr3:98031188-98031189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs78891457	chr3:98031223-98031224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs73142978	chr3:98031240-98031241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs78907770	chr3:98031247-98031248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs575989710	chr3:98031253-98031254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs58642779	chr3:98031282-98031283	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs529448496	chr3:98031290-98031291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs2316271	chr3:98031307-98031308	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs2316270	chr3:98031315-98031316	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs115413728	chr3:98031329-98031330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs539791060	chr3:98031344-98031345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533281563	chr3:98031349-98031350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs143163204	chr3:98031353-98031354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs2316269	chr3:98031378-98031379	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs553513516	chr3:98031433-98031434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs13096400	chr3:98031466-98031467	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs368494648	chr3:98031467-98031468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs535497601	chr3:98031507-98031508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185611597	chr3:98031512-98031513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs2316268	chr3:98031539-98031540	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs191097807	chr3:98031559-98031560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200429602	chr3:98031567-98031568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs148534081	chr3:98031568-98031569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs375366829	chr3:98031569-98031570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs56177664	chr3:98031572-98031573	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs540136564	chr3:98031581-98031582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs556534987	chr3:98031631-98031632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188433913	chr3:98031640-98031641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	21858020	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98028400-98039400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:98030800-98041800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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