Variant report

Variant	nsv963371
Chromosome Location	chr3:159819035-159820646
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373654783	chr3:159819037-159819038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs549340283	chr3:159819038-159819039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs567435827	chr3:159819095-159819096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112079998	chr3:159819119-159819120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs549679896	chr3:159819134-159819135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571332882	chr3:159819154-159819155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538304289	chr3:159819160-159819161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553354261	chr3:159819162-159819163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs368975980	chr3:159819171-159819172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs571753869	chr3:159819181-159819182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs186643613	chr3:159819197-159819198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs148193723	chr3:159819201-159819202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574223470	chr3:159819230-159819231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs544806995	chr3:159819245-159819246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562901253	chr3:159819279-159819280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs578147788	chr3:159819284-159819285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs545568446	chr3:159819342-159819343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs140047918	chr3:159819352-159819353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs527723656	chr3:159819394-159819395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112756501	chr3:159819403-159819404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs549379580	chr3:159819430-159819431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561255716	chr3:159819435-159819436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs531468652	chr3:159819439-159819440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200994479	chr3:159819450-159819451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs372920289	chr3:159819451-159819452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368102646	chr3:159819452-159819453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs34194191	chr3:159819461-159819462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs56089605	chr3:159819465-159819466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs549955222	chr3:159819485-159819486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs571305946	chr3:159819523-159819524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538443013	chr3:159819564-159819565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11921898	chr3:159819567-159819568	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs190363019	chr3:159819579-159819580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs182628039	chr3:159819591-159819592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs150486607	chr3:159819616-159819617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs11540305	chr3:159819628-159819629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374394516	chr3:159819650-159819651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs368441021	chr3:159819665-159819666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs535832786	chr3:159819667-159819668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs578235610	chr3:159819669-159819670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs138311385	chr3:159819697-159819698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs554338431	chr3:159819712-159819713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs572547203	chr3:159819715-159819716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs554586027	chr3:159819716-159819717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111639965	chr3:159819763-159819764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs561083677	chr3:159819780-159819781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs531634815	chr3:159819793-159819794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146136015	chr3:159819814-159819815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543398741	chr3:159819844-159819845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs371787368	chr3:159819851-159819852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159807000-159825000	Weak transcription	Pancreas	Pancrea
2	chr3:159817800-159823200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:159817800-159823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:159818000-159823200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:159818000-159823400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:159818200-159823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:159818400-159823200	Weak transcription	GM12878-XiMat	blood

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