Variant report

Variant	nsv964305
Chromosome Location	chr4:102814421-102819249
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102819220..102821914-chr4:102824309..102827008,2	MCF-7	breast:

Extended variants
information (count: 174 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:174 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534459738	chr4:102814423-102814424	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs552616576	chr4:102814445-102814446	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs191230412	chr4:102814457-102814458	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs183433467	chr4:102814469-102814470	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs186793910	chr4:102814477-102814478	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs556568284	chr4:102814542-102814543	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs574546011	chr4:102814543-102814544	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs372898358	chr4:102814602-102814603	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535565084	chr4:102814639-102814640	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs146914546	chr4:102814690-102814691	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571933277	chr4:102814705-102814706	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546010037	chr4:102814726-102814727	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs78861255	chr4:102814739-102814740	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs189968706	chr4:102814742-102814743	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs541356791	chr4:102814748-102814749	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543045289	chr4:102814771-102814772	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183318425	chr4:102814873-102814874	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs542468528	chr4:102814904-102814905	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561726168	chr4:102814925-102814926	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs528953683	chr4:102814941-102814942	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs553094347	chr4:102815021-102815022	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560640083	chr4:102815025-102815026	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs527865004	chr4:102815052-102815053	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs375228777	chr4:102815062-102815063	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs552771608	chr4:102815095-102815096	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs187956169	chr4:102815126-102815127	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs538535501	chr4:102815202-102815203	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549868526	chr4:102815250-102815251	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs193056074	chr4:102815280-102815281	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535529911	chr4:102815314-102815315	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139332776	chr4:102815325-102815326	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185186230	chr4:102815360-102815361	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs13109260	chr4:102815366-102815367	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs188096250	chr4:102815383-102815384	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs576208226	chr4:102815394-102815395	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs543707731	chr4:102815470-102815471	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs34904139	chr4:102815497-102815498	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs543783109	chr4:102815515-102815516	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs535065168	chr4:102815523-102815524	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs555344425	chr4:102815534-102815535	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs143241231	chr4:102815548-102815549	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs541055664	chr4:102815559-102815560	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs565162101	chr4:102815609-102815610	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs76522350	chr4:102815623-102815624	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs386401002	chr4:102815624-102815625	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs386401003	chr4:102815630-102815631	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs192673365	chr4:102815639-102815640	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs372744771	chr4:102815642-102815643	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs533094717	chr4:102815691-102815692	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs147501687	chr4:102815713-102815714	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	18000384	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
myeloid cancer	21057493	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102810400-102822600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:102812800-102816000	Strong transcription	Primary B cells from cord blood	blood
3	chr4:102813000-102827200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr4:102815400-102821000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:102816000-102817400	Weak transcription	Primary B cells from cord blood	blood
6	chr4:102817400-102824600	Strong transcription	Primary B cells from cord blood	blood

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