Variant report

Variant	nsv964386
Chromosome Location	chr20:26207635-26228273
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:26208071..26209607-chr3:75987301..75988916,2	K562	blood:
2	chr20:26208095..26209894-chr3:75988198..75990401,2	MCF-7	breast:

Extended variants
information (count: 527 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:527 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs146529532	chr20:26207651-26207652	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs71674126	chr20:26207656-26207657	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs62198218	chr20:26207673-26207674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
4	rs577176501	chr20:26207677-26207678	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs6138830	chr20:26207692-26207693	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs563045596	chr20:26207709-26207710	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs62198219	chr20:26207726-26207727	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs62198220	chr20:26207735-26207736	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs73354587	chr20:26207749-26207750	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112178715	chr20:26207763-26207764	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs73354588	chr20:26207779-26207780	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs62198221	chr20:26207820-26207821	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
13	rs62198222	chr20:26207823-26207824	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs548243012	chr20:26207834-26207835	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs561569465	chr20:26207836-26207837	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs527437944	chr20:26207860-26207861	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs75736880	chr20:26207867-26207868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs62198223	chr20:26207888-26207889	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs74382650	chr20:26207904-26207905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs71263610	chr20:26207905-26207906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs77916986	chr20:26207929-26207930	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs547300836	chr20:26207942-26207943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs570648350	chr20:26207971-26207972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs77723828	chr20:26207975-26207976	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs539469688	chr20:26207989-26207990	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs73354592	chr20:26208014-26208015	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs79267388	chr20:26208019-26208020	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs75461750	chr20:26208024-26208025	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs79000837	chr20:26208032-26208033	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs112198687	chr20:26208044-26208045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs76481535	chr20:26208052-26208053	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs76047683	chr20:26208072-26208073	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs62198224	chr20:26208102-26208103	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs549492075	chr20:26208119-26208120	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs75849046	chr20:26208154-26208155	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs76835490	chr20:26208156-26208157	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs370461141	chr20:26208157-26208158	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs78807918	chr20:26208169-26208170	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs79036476	chr20:26208179-26208180	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs77082728	chr20:26208189-26208190	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs76279129	chr20:26208211-26208212	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs569763600	chr20:26208234-26208235	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs80139968	chr20:26208255-26208256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs535556280	chr20:26208269-26208270	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs555471875	chr20:26208276-26208277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs62198225	chr20:26208280-26208281	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs575087129	chr20:26208288-26208289	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs199882424	chr20:26208304-26208305	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs540741592	chr20:26208306-26208307	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs79521325	chr20:26208308-26208309	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26200200-26214200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr20:26201800-26213400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr20:26203800-26207800	Weak transcription	Aorta	Aorta
4	chr20:26207600-26208600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:26207600-26209400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:26207600-26214200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr20:26207800-26208200	ZNF genes & repeats	Aorta	Aorta
8	chr20:26208200-26208800	ZNF genes & repeats	A549	lung
9	chr20:26208600-26210800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr20:26210000-26212000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:26210400-26212000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
12	chr20:26210800-26211400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:26211000-26211400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr20:26211200-26211400	Enhancers	Pancreas	Pancrea
15	chr20:26211400-26212800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr20:26212800-26213000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr20:26213400-26214000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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