Variant report

Variant	nsv964440
Chromosome Location	chr20:25351740-25387631
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1078)
CpG islands
(count:980)
Chromatin interactive
region (count:56)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1078 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:25371552-25371951	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:25358787-25359630	HepG2	liver:	n/a	n/a
3	ARID3A	chr20:25379639-25380138	HepG2	liver:	n/a	n/a
4	ARID3A	chr20:25379777-25380076	K562	blood:	n/a	n/a
5	ATF2	chr20:25371534-25371990	GM12878	blood:	n/a	n/a
6	BACH1	chr20:25371722-25371849	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr20:25370649-25370864	H1-hESC	embryonic stem cell:	n/a	n/a
8	BCL3	chr20:25353604-25353968	GM12878	blood:	n/a	n/a
9	BCL3	chr20:25353656-25353912	GM12878	blood:	n/a	n/a
10	BCL3	chr20:25371548-25372060	A549	lung:	n/a	chr20:25371619-25371632
11	BCLAF1	chr20:25371157-25371962	GM12878	blood:	n/a	chr20:25371487-25371496 chr20:25371619-25371632
12	BHLHE40	chr20:25371263-25371994	GM12878	blood:	n/a	n/a
13	BHLHE40	chr20:25371233-25371293	K562	blood:	n/a	n/a
14	BHLHE40	chr20:25359032-25359467	HepG2	liver:	n/a	n/a
15	BHLHE40	chr20:25370868-25371011	GM12878	blood:	n/a	n/a
16	BHLHE40	chr20:25379784-25380071	GM12878	blood:	n/a	n/a
17	BHLHE40	chr20:25371542-25371911	K562	blood:	n/a	n/a
18	BRCA1	chr20:25371739-25372395	H1-hESC	embryonic stem cell:	n/a	n/a
19	BRCA1	chr20:25371613-25371893	HepG2	liver:	n/a	n/a
20	BRCA1	chr20:25371107-25371156	HepG2	liver:	n/a	n/a
21	BRCA1	chr20:25359176-25359564	HepG2	liver:	n/a	n/a
22	CBX3	chr20:25383211-25383531	K562	blood:	n/a	n/a
23	CBX3	chr20:25383243-25383515	K562	blood:	n/a	n/a
24	CBX3	chr20:25371526-25371822	K562	blood:	n/a	n/a
25	CCNT2	chr20:25370579-25371889	K562	blood:	n/a	chr20:25371557-25371566 chr20:25371551-25371560 chr20:25370973-25370982 chr20:25370861-25370870
26	CEBPB	chr20:25362584-25363089	HepG2	liver:	n/a	n/a
27	CEBPB	chr20:25377053-25377163	HepG2	liver:	n/a	n/a
28	CEBPB	chr20:25362616-25362896	A549	lung:	n/a	n/a
29	CEBPB	chr20:25362656-25362909	HepG2	liver:	n/a	n/a
30	CEBPB	chr20:25362665-25362931	IMR90	lung:	n/a	n/a
31	CEBPB	chr20:25362613-25362924	MCF-7	breast:	n/a	n/a
32	CEBPB	chr20:25371570-25371728	HepG2	liver:	n/a	n/a
33	CEBPB	chr20:25360116-25360448	HepG2	liver:	n/a	chr20:25360288-25360297 chr20:25360288-25360297 chr20:25360288-25360297 chr20:25360286-25360299 chr20:25360286-25360299 chr20:25360288-25360299 chr20:25360286-25360297 chr20:25360288-25360297 chr20:25360286-25360299
34	CEBPB	chr20:25362650-25362808	HepG2	liver:	n/a	n/a
35	CEBPB	chr20:25362667-25362867	K562	blood:	n/a	n/a
36	CEBPB	chr20:25353656-25353825	HepG2	liver:	n/a	n/a
37	CEBPB	chr20:25360147-25360429	K562	blood:	n/a	chr20:25360288-25360297 chr20:25360288-25360297 chr20:25360288-25360297 chr20:25360286-25360299 chr20:25360286-25360299 chr20:25360288-25360299 chr20:25360286-25360297 chr20:25360288-25360297 chr20:25360286-25360299
38	CEBPB	chr20:25362654-25362941	Hela-S3	cervix:	n/a	n/a
39	CEBPB	chr20:25353226-25353527	Hela-S3	cervix:	n/a	n/a
40	CEBPB	chr20:25360106-25360362	A549	lung:	n/a	chr20:25360288-25360297 chr20:25360288-25360297 chr20:25360288-25360297 chr20:25360286-25360299 chr20:25360286-25360299 chr20:25360288-25360299 chr20:25360286-25360297 chr20:25360288-25360297 chr20:25360286-25360299
41	CEBPB	chr20:25353164-25353949	IMR90	lung:	n/a	n/a
42	CEBPB	chr20:25360128-25360391	IMR90	lung:	n/a	chr20:25360288-25360297 chr20:25360288-25360297 chr20:25360288-25360297 chr20:25360286-25360299 chr20:25360286-25360299 chr20:25360288-25360299 chr20:25360286-25360297 chr20:25360288-25360297 chr20:25360286-25360299
43	CEBPB	chr20:25358971-25359647	HepG2	liver:	n/a	n/a
44	CEBPB	chr20:25362565-25362873	MCF-7	breast:	n/a	n/a
45	CEBPB	chr20:25362601-25363086	HepG2	liver:	n/a	n/a
46	CEBPB	chr20:25368857-25369021	HepG2	liver:	n/a	chr20:25368901-25368912
47	CEBPD	chr20:25371518-25371866	HepG2	liver:	n/a	n/a
48	CEBPD	chr20:25370812-25371282	HepG2	liver:	n/a	n/a
49	CEBPD	chr20:25371285-25371940	HepG2	liver:	n/a	n/a
50	CEBPZ	chr20:25379503-25379899	HepG2	liver:	n/a	n/a

(count:980 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:25371852-25371902	Hela-S3	cervix:	n/a
2	chr20:25371408-25371458	U87	brain:	n/a
3	chr20:25382007-25382057	Hela-S3	cervix:	n/a
4	chr20:25371667-25371717	HCM	heart:	n/a
5	chr20:25371852-25371902	Hela-S3	cervix:	n/a
6	chr20:25371408-25371458	U87	brain:	n/a
7	chr20:25382007-25382057	Hela-S3	cervix:	n/a
8	chr20:25371667-25371717	HCM	heart:	n/a
9	chr20:25371852-25371902	SKMC	muscle:	n/a
10	chr20:25368123-25368173	HEEpiC	esophagus:	n/a
11	chr20:25368906-25368956	HAEpiC	amniotic membrane:	n/a
12	chr20:25381464-25381514	AG09319	gingival:	n/a
13	chr20:25371439-25371489	BJ	skin:	n/a
14	chr20:25374524-25374574	HCT-116	colon:	n/a
15	chr20:25370897-25370947	GM12878	blood:	n/a
16	chr20:25382007-25382057	GM12892	blood:	n/a
17	chr20:25370336-25370386	Hepatocyte	liver:	n/a
18	chr20:25368906-25368956	Hela-S3	cervix:	n/a
19	chr20:25370897-25370947	MCF-7	breast:	n/a
20	chr20:25382007-25382057	NB4	blood:	n/a
21	chr20:25371852-25371902	GM12892	blood:	n/a
22	chr20:25370897-25370947	AG10803	skin:	n/a
23	chr20:25374524-25374574	HCPEpiC	choroid plexus:	n/a
24	chr20:25370897-25370947	ovcar-3	ovarian:	n/a
25	chr20:25386216-25386266	PrEC	prostate:	n/a
26	chr20:25371852-25371902	ProgFib	skin:	n/a
27	chr20:25386216-25386266	Hepatocyte	liver:	n/a
28	chr20:25368906-25368956	Hepatocyte	liver:	n/a
29	chr20:25371665-25371715	HCM	heart:	n/a
30	chr20:25371822-25371872	AG09309	skin:	n/a
31	chr20:25368906-25368956	SK-N-MC	brain:	n/a
32	chr20:25371667-25371717	A549	lung:	n/a
33	chr20:25368123-25368173	ovcar-3	ovarian:	n/a
34	chr20:25368123-25368173	HRPEpiC	eye:	n/a
35	chr20:25381464-25381514	SK-N-MC	brain:	n/a
36	chr20:25371700-25371750	HPAEpiC	pulmonary alveolar:	n/a
37	chr20:25370336-25370386	HCT-116	colon:	n/a
38	chr20:25370897-25370947	Caco-2	colon:	n/a
39	chr20:25368123-25368173	HCT-116	colon:	n/a
40	chr20:25371408-25371458	Hela-S3	cervix:	n/a
41	chr20:25386216-25386266	HUVEC	blood vessel:	n/a
42	chr20:25382007-25382057	HCT-116	colon:	n/a
43	chr20:25382007-25382057	HL-60	blood:	n/a
44	chr20:25386216-25386266	NB4	blood:	n/a
45	chr20:25371719-25371769	H1-hESC	embryonic stem cell:	embryo
46	chr20:25371719-25371769	NHBE	bronchial:	n/a
47	chr20:25371665-25371715	GM12892	blood:	n/a
48	chr20:25371719-25371769	PFSK-1	brain:	n/a
49	chr20:25370897-25370947	K562	blood:	n/a
50	chr20:25371700-25371750	LNCaP	prostate:	n/a

(count:56 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr20:25363843..25367696-chr20:25367830..25371545,6	MCF-7	breast:
2	chr20:25371881..25374643-chr20:25387255..25389810,3	K562	blood:
3	chr20:24976100..24978484-chr20:25364511..25366126,2	MCF-7	breast:
4	chr20:25347572..25351720-chr20:25369390..25373253,5	MCF-7	breast:
5	chr20:25341755..25344650-chr20:25359957..25362246,2	MCF-7	breast:
6	chr20:25318544..25319155-chr20:25379499..25380008,2	MCF-7	breast:
7	chr20:25382269..25384430-chr20:25387630..25389811,2	K562	blood:
8	chr20:25369196..25373772-chr20:25386901..25390344,6	MCF-7	breast:
9	chr20:25359494..25361888-chr20:25364164..25366430,2	MCF-7	breast:
10	chr20:25360007..25361800-chr20:25361801..25365335,3	K562	blood:
11	chr20:25359494..25361888-chr20:25364164..25366430,2	MCF-7	breast:
12	chr1:57110843..57111363-chr20:25371274..25371823,2	HCT-116	colon:
13	chr20:25274373..25276866-chr20:25369511..25371754,2	K562	blood:
14	chr20:25316023..25323524-chr20:25367529..25373124,12	MCF-7	breast:
15	chr20:25175542..25177840-chr20:25370513..25373072,2	MCF-7	breast:
16	chr20:25370156..25372734-chr20:25387934..25390472,3	MCF-7	breast:
17	chr20:25356181..25358893-chr20:25361208..25363554,2	MCF-7	breast:
18	chr20:25356181..25358893-chr20:25361208..25363554,2	MCF-7	breast:
19	chr20:25360614..25362965-chr20:25368758..25370561,4	K562	blood:
20	chr20:25274540..25275681-chr20:25379513..25380502,6	MCF-7	breast:
21	chr20:25385575..25388779-chr20:25393238..25395970,3	K562	blood:
22	chr20:25360141..25362802-chr20:25370574..25373399,2	K562	blood:
23	chr20:25324909..25327111-chr20:25375106..25376972,2	MCF-7	breast:
24	chr20:25370702..25372613-chr20:25374796..25376547,2	MCF-7	breast:
25	chr20:25369196..25373772-chr20:25386901..25390344,6	MCF-7	breast:
26	chr20:25371188..25372153-chr7:107220709..107221225,2	NB4	blood:
27	chr13:21871962..21872942-chr20:25371307..25371996,2	HCT-116	colon:
28	chr15:49912687..49913620-chr20:25371398..25371935,2	NB4	blood:
29	chr20:25289180..25292078-chr20:25367656..25369637,3	MCF-7	breast:
30	chr13:21347533..21348089-chr20:25371504..25372138,2	NB4	blood:
31	chr20:25316916..25317821-chr20:25379512..25380380,4	MCF-7	breast:
32	chr20:25377062..25378773-chr20:25386652..25389539,2	K562	blood:
33	chr20:25359484..25361407-chr20:25367475..25371345,3	MCF-7	breast:
34	chr20:25362177..25366846-chr20:25370134..25372781,8	MCF-7	breast:
35	chr20:25360007..25361800-chr20:25361801..25365335,3	K562	blood:
36	chr20:25360614..25362965-chr20:25368758..25370561,4	K562	blood:
37	chr20:25383291..25386205-chr20:25386365..25388737,3	MCF-7	breast:
38	chr20:25367909..25369647-chr20:25375596..25377784,2	MCF-7	breast:
39	chr20:25277532..25280083-chr20:25374458..25376489,2	K562	blood:
40	chr20:25275140..25276137-chr20:25379287..25380023,3	MCF-7	breast:
41	chr20:24973500..24975861-chr20:25384259..25387078,2	MCF-7	breast:
42	chr20:25369869..25371629-chr20:25378705..25380608,2	MCF-7	breast:
43	chr20:25290481..25292963-chr20:25369877..25371974,2	MCF-7	breast:
44	chr20:25343880..25345898-chr20:25371718..25374578,2	MCF-7	breast:
45	chr20:25316896..25317861-chr20:25379425..25380434,7	MCF-7	breast:
46	chr20:25360394..25363180-chr20:25371562..25374296,2	MCF-7	breast:
47	chr20:25369295..25372738-chr20:25374482..25377182,6	MCF-7	breast:
48	chr20:25369990..25372746-chr20:25384220..25386698,2	K562	blood:
49	chr20:25274762..25275867-chr20:25379505..25380419,5	K562	blood:
50	chr20:25274830..25275740-chr20:25378372..25379283,2	MCF-7	breast:

No data

Variant related genes	Relation type
PPIAP2	TF binding region
ABHD12	TF binding region
GINS1	TF binding region
PPIAP2	CpG island
ABHD12	CpG island
GINS1	CpG island
ENSG00000150456	chromatin interactions
ENSG00000197586	chromatin interactions
ENSG00000101003	chromatin interactions
ENSG00000227379	chromatin interactions
ENSG00000100997	chromatin interactions
ENSG00000075790	chromatin interactions
ENSG00000166262	chromatin interactions
ENSG00000162409	chromatin interactions
ENSG00000100994	chromatin interactions
ENSG00000162407	chromatin interactions
ENSG00000101474	chromatin interactions
ENSG00000233325	chromatin interactions
ENSG00000104047	chromatin interactions

Extended variants
information (count: 1446 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:1446 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs376702340	chr20:25351799-25351800	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs75733497	chr20:25351815-25351816	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs367835875	chr20:25351821-25351822	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs149231808	chr20:25351822-25351823	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs557836042	chr20:25351871-25351872	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs369000945	chr20:25351917-25351918	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs186598601	chr20:25351956-25351957	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs537323227	chr20:25351989-25351990	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs371248728	chr20:25351993-25351994	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs528307959	chr20:25352037-25352038	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs557566515	chr20:25352051-25352052	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs573887801	chr20:25352053-25352054	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs373238516	chr20:25352109-25352110	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs191136384	chr20:25352134-25352135	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs73347066	chr20:25352139-25352140	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs558358412	chr20:25352141-25352142	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs143389399	chr20:25352191-25352192	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs530866549	chr20:25352204-25352205	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs183352066	chr20:25352296-25352297	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs148366449	chr20:25352316-25352317	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs143422184	chr20:25352412-25352413	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs537613849	chr20:25352419-25352420	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs187541349	chr20:25352429-25352430	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs192919562	chr20:25352457-25352458	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs145739072	chr20:25352460-25352461	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs185241239	chr20:25352479-25352480	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs556339206	chr20:25352544-25352545	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs138757793	chr20:25352559-25352560	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs142739446	chr20:25352587-25352588	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs4813562	chr20:25352588-25352589	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs34370525	chr20:25352615-25352616	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs150783861	chr20:25352661-25352662	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs536463055	chr20:25352744-25352745	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs182768992	chr20:25352821-25352822	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs565717310	chr20:25352852-25352853	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs539579415	chr20:25352857-25352858	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs76430402	chr20:25352869-25352870	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs373544870	chr20:25352925-25352926	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs139142335	chr20:25353033-25353034	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs572632069	chr20:25353064-25353065	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs544761618	chr20:25353096-25353097	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs558561320	chr20:25353116-25353117	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs372706856	chr20:25353158-25353159	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs575125702	chr20:25353161-25353162	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs188162584	chr20:25353168-25353169	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs149498797	chr20:25353190-25353191	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs529984190	chr20:25353206-25353207	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs192868970	chr20:25353253-25353254	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs560370160	chr20:25353256-25353257	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs528632027	chr20:25353292-25353293	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Breast cancer	16608533	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17133270	CNVD
Thrombophilia	17576883	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Hepatocellular carcinoma	22174799	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Oral cancer	21386901	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1090 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25327400-25361400	Weak transcription	Primary T cells from cord blood	blood
2	chr20:25334600-25353600	Weak transcription	Aorta	Aorta
3	chr20:25334600-25357600	Weak transcription	Fetal Muscle Leg	muscle
4	chr20:25334800-25362600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr20:25337000-25370000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr20:25337400-25355600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr20:25337600-25353600	Weak transcription	Thymus	Thymus
8	chr20:25337600-25354200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:25337600-25362800	Weak transcription	Spleen	Spleen
10	chr20:25338000-25369400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr20:25338200-25359000	Weak transcription	Fetal Intestine Large	intestine
12	chr20:25339400-25359600	Weak transcription	Lung	lung
13	chr20:25341800-25357600	Weak transcription	Ovary	ovary
14	chr20:25342200-25353200	Weak transcription	Fetal Lung	lung
15	chr20:25342200-25354600	Weak transcription	Dnd41	blood
16	chr20:25342200-25361800	Weak transcription	Primary B cells from cord blood	blood
17	chr20:25342200-25362600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr20:25342200-25370000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr20:25342400-25355600	Weak transcription	A549	lung
20	chr20:25342400-25357600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr20:25343800-25370000	Weak transcription	Small Intestine	intestine
22	chr20:25345200-25369800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr20:25345600-25353600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr20:25345800-25353200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr20:25345800-25354200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr20:25345800-25357600	Weak transcription	Right Atrium	heart
27	chr20:25345800-25359400	Weak transcription	Left Ventricle	heart
28	chr20:25345800-25359600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr20:25345800-25361600	Weak transcription	K562	blood
30	chr20:25345800-25363200	Weak transcription	Esophagus	oesophagus
31	chr20:25345800-25369800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr20:25345800-25370000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr20:25345800-25370000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr20:25346200-25357600	Weak transcription	HepG2	liver
35	chr20:25346200-25362800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr20:25346600-25355200	Weak transcription	Gastric	stomach
37	chr20:25347600-25357600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr20:25348800-25353200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr20:25349200-25353600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr20:25349600-25351800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr20:25349600-25353000	Weak transcription	Fetal Stomach	stomach
42	chr20:25350000-25352400	Enhancers	Brain Cingulate Gyrus	brain
43	chr20:25350000-25352600	Enhancers	Brain Hippocampus Middle	brain
44	chr20:25350200-25352000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr20:25350200-25352000	Enhancers	Pancreas	Pancrea
46	chr20:25350200-25352200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr20:25350200-25352600	Enhancers	Brain Anterior Caudate	brain
48	chr20:25350400-25352000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr20:25350400-25353200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr20:25350600-25357000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links