Variant report

Variant	nsv964512
Chromosome Location	chr21:15283864-15287797
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POTED-11	chr21:15286426-15287046	NONHSAT081129

Extended variants
information (count: 242 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:242 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547382271	chr21:15283897-15283898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs202239229	chr21:15283923-15283924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs529935272	chr21:15283928-15283929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs550028618	chr21:15283937-15283938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs569752351	chr21:15283952-15283953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs370996247	chr21:15283972-15283973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374758658	chr21:15284009-15284010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200778250	chr21:15284081-15284082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs538779955	chr21:15284111-15284112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs552199513	chr21:15284124-15284125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs565544532	chr21:15284150-15284151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201289722	chr21:15284158-15284159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201730418	chr21:15284203-15284204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs13046909	chr21:15284227-15284228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200228966	chr21:15284231-15284232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs568807993	chr21:15284256-15284257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs535285379	chr21:15284281-15284282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs554981645	chr21:15284290-15284291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574950246	chr21:15284302-15284303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537228641	chr21:15284324-15284325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201009244	chr21:15284337-15284338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557170693	chr21:15284338-15284339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs35916922	chr21:15284341-15284342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs576920933	chr21:15284354-15284355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs368373911	chr21:15284374-15284375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs545893681	chr21:15284381-15284382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559657324	chr21:15284396-15284397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs35926564	chr21:15284412-15284413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs181940156	chr21:15284419-15284420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs370908593	chr21:15284427-15284428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs186314107	chr21:15284445-15284446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs141838164	chr21:15284447-15284448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561002783	chr21:15284451-15284452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs35813974	chr21:15284463-15284464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs35278394	chr21:15284468-15284469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs34207351	chr21:15284484-15284485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35892970	chr21:15284487-15284488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs59651106	chr21:15284504-15284505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs149452652	chr21:15284507-15284508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549961543	chr21:15284528-15284529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs143228662	chr21:15284529-15284530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs35388865	chr21:15284541-15284542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs572966265	chr21:15284549-15284550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs563475676	chr21:15284579-15284580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs532240400	chr21:15284585-15284586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs147497457	chr21:15284587-15284588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs35214135	chr21:15284600-15284601	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs58392564	chr21:15284684-15284685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs199920027	chr21:15284700-15284701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs371468633	chr21:15284701-15284702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Down syndrome	17412756	CNVD
Down syndrome	17576883	CNVD
Acute promyelocytic leukemia	19109227	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
T-cell lymphomas	19863542	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Renal cell carcinoma	19461508	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	21549014	CNVD
Mental retardation	21549014	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Metanephric adenoma	20802469	CNVD
Neuroblastoma	18923191	CNVD
Prostate cancer	19156837	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
lymphocytic leukemia	21291569	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute myeloid leukemia	21251322	CNVD
abnormal development	18461090	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Melanoma	17363583	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15277000-15292200	Weak transcription	Dnd41	blood

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