Variant report

Variant	nsv964542
Chromosome Location	chr21:15659866-15666489
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:15660835..15662589-chr21:15663071..15665656,2	MCF-7	breast:
2	chr21:15658088..15660152-chr21:15664037..15665784,2	MCF-7	breast:
3	chr21:15658088..15660152-chr21:15664037..15665784,2	MCF-7	breast:
4	chr21:15637824..15639860-chr21:15661262..15662859,2	MCF-7	breast:
5	chr21:15660835..15662589-chr21:15663071..15665656,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RBM11-5	chr21:15663891-15664068	NONHSAT081154
2	lnc-RBM11-5	chr21:15659871-15660018	NONHSAT081154
3	lnc-RBM11-5	chr21:15660725-15660867	NONHSAT081156
4	lnc-RBM11-5	chr21:15660725-15660867	NONHSAT081154
5	lnc-HSPA13-2	chr21:15664712-15665101	NONHSAT081159
6	lnc-RBM11-5	chr21:15663607-15663706	NONHSAT081156
7	lnc-RBM11-5	chr21:15659871-15660018	NONHSAT081156

No data

Extended variants
information (count: 240 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:240 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190695177	chr21:15659924-15659925	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs141171741	chr21:15659952-15659953	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs564663752	chr21:15659954-15659955	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs533657482	chr21:15659960-15659961	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs113483773	chr21:15659987-15659988	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs267606080	chr21:15659994-15659995	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs115997618	chr21:15660066-15660067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs535941560	chr21:15660086-15660087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs569749932	chr21:15660101-15660102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs539690947	chr21:15660135-15660136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529470147	chr21:15660153-15660154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs555930467	chr21:15660168-15660169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs374384396	chr21:15660213-15660214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs549502644	chr21:15660248-15660249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs1468704	chr21:15660262-15660263	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs115742963	chr21:15660287-15660288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs145169154	chr21:15660301-15660302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs571521798	chr21:15660366-15660367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs569391233	chr21:15660370-15660371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs148368371	chr21:15660452-15660453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200580314	chr21:15660465-15660466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs183987408	chr21:15660511-15660512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs188894253	chr21:15660529-15660530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs1153304	chr21:15660539-15660540	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs555081703	chr21:15660565-15660566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs191020639	chr21:15660613-15660614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574981602	chr21:15660654-15660655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs543896960	chr21:15660665-15660666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs557759922	chr21:15660684-15660685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs2276213	chr21:15660685-15660686	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs2276214	chr21:15660689-15660690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs73342270	chr21:15660703-15660704	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs1153305	chr21:15660716-15660717	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs200467659	chr21:15660758-15660759	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs529559957	chr21:15660769-15660770	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs543226819	chr21:15660839-15660840	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs61744467	chr21:15660844-15660845	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs201409013	chr21:15660869-15660870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs186688552	chr21:15660888-15660889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs551549444	chr21:15660941-15660942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs571622068	chr21:15660970-15660971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs191503136	chr21:15660984-15660985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs184078388	chr21:15661001-15661002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs554093865	chr21:15661019-15661020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs116708768	chr21:15661065-15661066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs535302550	chr21:15661082-15661083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs187264696	chr21:15661118-15661119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs59704604	chr21:15661140-15661141	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs151190130	chr21:15661147-15661148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs537964354	chr21:15661189-15661190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Down syndrome	17412756	CNVD
Down syndrome	17576883	CNVD
Acute promyelocytic leukemia	19109227	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell lymphomas	19863542	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Renal cell carcinoma	19461508	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Metanephric adenoma	20802469	CNVD
Neuroblastoma	18923191	CNVD
Prostate cancer	19156837	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
lymphocytic leukemia	21291569	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute myeloid leukemia	21251322	CNVD
abnormal development	18461090	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Multiple myeloma	17550852	CNVD
Myelofibrosis	22110671	CNVD
Alzheimer''s disease	18923514	CNVD
Alzheimer''s disease	20877625	CNVD
Follicular lymphoma	20505157	CNVD
Alzheimer''s disease	21956041	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Melanoma	18172304	CNVD
Autism	22958593	CNVD
Schizophrenia	22958593	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15654000-15662800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr21:15654400-15661200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr21:15654800-15661200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr21:15655000-15661800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr21:15657600-15662400	Weak transcription	K562	blood
6	chr21:15661200-15661400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr21:15661200-15661600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr21:15661600-15669000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr21:15662400-15663400	Enhancers	K562	blood
10	chr21:15662800-15663000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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