Variant report

Variant	nsv964730
Chromosome Location	chr4:150624934-150633213
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCLK2-2	chr4:150632104-150632301	XLOC_003732

Variant related genes	Relation type
FOXO3	miRNA target sites

Extended variants
information (count: 267 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:267 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544234172	chr4:150624941-150624942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs564021317	chr4:150625029-150625030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539475616	chr4:150625037-150625038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs551712018	chr4:150625038-150625039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs546420150	chr4:150625084-150625085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs182981646	chr4:150625089-150625090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs80261675	chr4:150625104-150625105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs548735997	chr4:150625176-150625177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs568430391	chr4:150625180-150625181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs141031621	chr4:150625197-150625198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs531040321	chr4:150625225-150625226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571059194	chr4:150625232-150625233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574587838	chr4:150625250-150625251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs575105219	chr4:150625287-150625288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs188765291	chr4:150625319-150625320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs570551545	chr4:150625335-150625336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs549472297	chr4:150625366-150625367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs539431979	chr4:150625499-150625500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs553217979	chr4:150625503-150625504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs192871756	chr4:150625522-150625523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534978969	chr4:150625528-150625529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112028496	chr4:150625543-150625544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535303796	chr4:150625578-150625579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs555495383	chr4:150625589-150625590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs575610423	chr4:150625594-150625595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs183535745	chr4:150625605-150625606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs375863297	chr4:150625656-150625657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs564366215	chr4:150625668-150625669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs566611560	chr4:150625683-150625684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs554836532	chr4:150625689-150625690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs150136533	chr4:150625706-150625707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs187970407	chr4:150625734-150625735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs547010030	chr4:150625740-150625741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138554569	chr4:150625741-150625742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192346362	chr4:150625797-150625798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs149270826	chr4:150626020-150626021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs572744495	chr4:150626026-150626027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs5862891	chr4:150626177-150626178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs531000276	chr4:150626178-150626179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs550896193	chr4:150626186-150626187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs557704615	chr4:150626241-150626242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201493509	chr4:150626309-150626310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200021467	chr4:150626318-150626319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs17625348	chr4:150626461-150626462	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs113486479	chr4:150626495-150626496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539470200	chr4:150626501-150626502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs536750962	chr4:150626525-150626526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs566859243	chr4:150626554-150626555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs143474638	chr4:150626590-150626591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs375439525	chr4:150626640-150626641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150624000-150629800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:150627600-150628200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:150628000-150628600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:150628000-150630600	Enhancers	HUVEC	blood vessel
5	chr4:150628200-150628400	Enhancers	NHEK	skin
6	chr4:150628200-150628600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:150628200-150628600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:150628200-150628800	Enhancers	NH-A	brain
9	chr4:150628200-150630600	Enhancers	Fetal Heart	heart
10	chr4:150628400-150628600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:150628400-150628800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:150628400-150629200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:150628600-150629000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:150628600-150629000	Enhancers	Aorta	Aorta
15	chr4:150628600-150629000	Enhancers	Right Atrium	heart
16	chr4:150628600-150629600	Weak transcription	NHEK	skin
17	chr4:150628600-150629800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:150628600-150631000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:150628600-150631200	Enhancers	Hela-S3	cervix
20	chr4:150628600-150632400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:150628800-150629800	Weak transcription	NH-A	brain
22	chr4:150628800-150636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:150629000-150630600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:150629000-150631200	Enhancers	HMEC	breast
25	chr4:150629000-150633200	Weak transcription	Right Atrium	heart
26	chr4:150629200-150629600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:150629600-150630400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:150629600-150630600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:150629600-150631000	Enhancers	NHEK	skin
30	chr4:150629800-150630600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:150629800-150630600	Enhancers	NH-A	brain
32	chr4:150629800-150631000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:150629800-150632600	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr4:150630200-150631000	Enhancers	NHLF	lung
35	chr4:150630200-150631200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:150630600-150631800	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr4:150630600-150632400	Weak transcription	Fetal Heart	heart
38	chr4:150630800-150631000	Enhancers	Left Ventricle	heart
39	chr4:150631000-150637000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:150631200-150633200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:150631800-150636800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr4:150632400-150632600	Enhancers	Fetal Heart	heart
43	chr4:150632400-150635000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr4:150632600-150633000	Weak transcription	Fetal Heart	heart
45	chr4:150632600-150633000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:150633000-150633600	Enhancers	Fetal Heart	heart
47	chr4:150633000-150633600	Enhancers	Fetal Lung	lung
48	chr4:150633000-150633600	Enhancers	Fetal Muscle Leg	muscle
49	chr4:150633200-150633400	Enhancers	Psoas Muscle	Psoas
50	chr4:150633200-150633600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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