Variant report

Variant	nsv964866
Chromosome Location	chr5:68765849-68772881
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OCLN-3	chr5:68765710-68765963	NONHSAT101922
2	lnc-OCLN-3	chr5:68765680-68766014	NONHSAT101921

Extended variants
information (count: 246 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:246 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548065678	chr5:68765858-68765859	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs560259441	chr5:68765882-68765883	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs74338040	chr5:68765887-68765888	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs142899110	chr5:68765973-68765974	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs570119767	chr5:68765974-68765975	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs185749451	chr5:68765983-68765984	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs35687217	chr5:68766021-68766022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs550495022	chr5:68766044-68766045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs568635712	chr5:68766058-68766059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs536083042	chr5:68766084-68766085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs377350437	chr5:68766153-68766154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs370653993	chr5:68766167-68766168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs554091319	chr5:68766172-68766173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572651007	chr5:68766239-68766240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs28579732	chr5:68766244-68766245	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs564484707	chr5:68766256-68766257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs189822285	chr5:68766379-68766380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs28637859	chr5:68766397-68766398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs116117112	chr5:68766416-68766417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs550118219	chr5:68766460-68766461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182765922	chr5:68766498-68766499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561988512	chr5:68766499-68766500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs574659272	chr5:68766530-68766531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371079563	chr5:68766686-68766687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs386688892	chr5:68766689-68766690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs542078623	chr5:68766690-68766691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs28652932	chr5:68766735-68766736	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs527442134	chr5:68766765-68766766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187287871	chr5:68766771-68766772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs144651607	chr5:68766792-68766793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs563831917	chr5:68766856-68766857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs531231557	chr5:68766885-68766886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs549498226	chr5:68766891-68766892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs34341010	chr5:68766935-68766936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs542210116	chr5:68766957-68766958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs35935899	chr5:68766961-68766962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35854187	chr5:68766969-68766970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs568017667	chr5:68766977-68766978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs535796316	chr5:68767005-68767006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs192076035	chr5:68767007-68767008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs566287101	chr5:68767132-68767133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs540030379	chr5:68767157-68767158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs558331150	chr5:68767185-68767186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs4596336	chr5:68767240-68767241	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs184114597	chr5:68767313-68767314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs187277010	chr5:68767370-68767371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs375122749	chr5:68767390-68767391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146701919	chr5:68767473-68767474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs553638854	chr5:68767476-68767477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs192109759	chr5:68767491-68767492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ovarian cancer	21781307	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	22032731	CNVD
Prostate cancer	21965145	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
abnormal development	18461090	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	21045282	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Myelodysplastic syndrome	18663149	CNVD
Spinal muscular atrophy	15981080	CNVD
Spinal muscular atrophy	18839960	CNVD
Spinal muscular atrophy	19716110	CNVD
Sezary syndrome	18413736	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21990379	CNVD
Hirschsprung''s Disease	21712996	CNVD
Apoptosis	19488400	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Acute monocytic leukemia	16498392	CNVD
Colorectal cancer	20459617	CNVD
Gastric adenocarcinoma	19115996	CNVD
Spinal muscular atrophy	17160897	CNVD
Spinal muscular atrophy	17668391	CNVD
Spinal muscular atrophy	17668395	CNVD
Glioblastoma multiforme	22286061	CNVD
craniofacial dysmorphism	21918468	CNVD
Multiple myeloma	16616336	CNVD
Prostate cancer	16461572	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68757000-68768000	Weak transcription	Stomach Mucosa	stomach
2	chr5:68767000-68768200	Weak transcription	HepG2	liver
3	chr5:68768000-68768600	Active TSS	Stomach Mucosa	stomach
4	chr5:68768200-68768600	Enhancers	HepG2	liver
5	chr5:68768600-68772800	Weak transcription	Stomach Mucosa	stomach
6	chr5:68771000-68771200	Enhancers	HUVEC	blood vessel
7	chr5:68771400-68772600	Weak transcription	HUVEC	blood vessel
8	chr5:68772600-68772800	Enhancers	HUVEC	blood vessel
9	chr5:68772800-68773400	Enhancers	Stomach Mucosa	stomach
10	chr5:68772800-68773600	Enhancers	HepG2	liver
11	chr5:68772800-68773600	Flanking Active TSS	HUVEC	blood vessel

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