Variant report

Variant	nsv965179
Chromosome Location	chr3:75983597-75989669
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:26208095..26209894-chr3:75988198..75990401,2	MCF-7	breast:
2	chr20:26208071..26209607-chr3:75987301..75988916,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FRG2C-12	chr3:75986632-75986776	NONHSAT090553

Extended variants
information (count: 330 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:330 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371724651	chr3:75983621-75983622	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs80117177	chr3:75983622-75983623	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs114869190	chr3:75983626-75983627	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs73123273	chr3:75983634-75983635	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs143276175	chr3:75983643-75983644	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs4009820	chr3:75983649-75983650	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs530519786	chr3:75983663-75983664	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs80186855	chr3:75983668-75983669	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs79432195	chr3:75983689-75983690	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs72886564	chr3:75983712-75983713	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs550380041	chr3:75983715-75983716	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs72886565	chr3:75983720-75983721	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs71264723	chr3:75983725-75983726	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs74597203	chr3:75983759-75983760	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs75093085	chr3:75983764-75983765	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs571855410	chr3:75983784-75983785	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs369730788	chr3:75983812-75983813	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs568402580	chr3:75983821-75983822	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs375433901	chr3:75983832-75983833	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs370096196	chr3:75983834-75983835	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs539356963	chr3:75983843-75983844	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs76551943	chr3:75983844-75983845	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs554477571	chr3:75983853-75983854	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs71264724	chr3:75983870-75983871	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs536807847	chr3:75983876-75983877	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs73841015	chr3:75983877-75983878	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs73841016	chr3:75983898-75983899	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs75540966	chr3:75983937-75983938	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs72886569	chr3:75984007-75984008	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs77303988	chr3:75984030-75984031	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs62269787	chr3:75984040-75984041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs566083121	chr3:75984075-75984076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs72886571	chr3:75984080-75984081	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs536691301	chr3:75984097-75984098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs1976659	chr3:75984121-75984122	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs12490585	chr3:75984127-75984128	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs74281655	chr3:75984143-75984144	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs73123275	chr3:75984157-75984158	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs201238014	chr3:75984165-75984166	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs202120980	chr3:75984166-75984167	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs374589478	chr3:75984178-75984179	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs77727058	chr3:75984180-75984181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs66762505	chr3:75984202-75984203	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs543535177	chr3:75984207-75984208	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs189402422	chr3:75984212-75984213	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs73123279	chr3:75984216-75984217	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs80119417	chr3:75984222-75984223	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs114243169	chr3:75984237-75984238	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs115805286	chr3:75984240-75984241	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs553289283	chr3:75984243-75984244	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Prostate cancer	18632612	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Ovarian cancer	21720365	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:75982600-75983600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:75983200-75986800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr3:75983600-75984600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr3:75984800-75987000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr3:75985000-75985400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr3:75986400-75986800	ZNF genes & repeats	NHLF	lung
7	chr3:75986600-75986800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:75986600-75986800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:75986600-75986800	Enhancers	Esophagus	oesophagus
10	chr3:75986600-75986800	ZNF genes & repeats	Fetal Brain Male	brain
11	chr3:75986600-75986800	Enhancers	Gastric	stomach
12	chr3:75986600-75986800	ZNF genes & repeats	Pancreas	Pancrea
13	chr3:75986600-75986800	ZNF genes & repeats	Spleen	Spleen
14	chr3:75987200-75988200	Weak transcription	Fetal Brain Male	brain

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