Variant report

Variant	nsv965191
Chromosome Location	chr3:98187695-98189251
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:98188579-98188666	ProgFib	skin:	n/a	n/a
2	CTCF	chr3:98188577-98188578	ProgFib	skin:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:98189197-98189247	SAEC	small airway:	n/a
2	chr3:98189197-98189247	HCPEpiC	choroid plexus:	n/a
3	chr3:98189197-98189247	BJ	skin:	n/a
4	chr3:98189197-98189247	A549	lung:	n/a
5	chr3:98189197-98189247	AG04450	lung:	fetal
6	chr3:98189197-98189247	GM12892	blood:	n/a
7	chr3:98189197-98189247	HPAEpiC	pulmonary alveolar:	n/a
8	chr3:98189197-98189247	HCT-116	colon:	n/a
9	chr3:98189197-98189247	ProgFib	skin:	n/a
10	chr3:98189197-98189247	HL-60	blood:	n/a
11	chr3:98189197-98189247	MCF-7	breast:	n/a
12	chr3:98189197-98189247	Hela-S3	cervix:	n/a
13	chr3:98189197-98189247	T-47D	breast:	n/a
14	chr3:98189197-98189247	NT2-D1	testis:	n/a
15	chr3:98189197-98189247	U87	brain:	n/a
16	chr3:98189197-98189247	PANC-1	pancreas:	n/a
17	chr3:98189197-98189247	HEK293	kidney:	embryo
18	chr3:98189197-98189247	GM12891	blood:	n/a
19	chr3:98189197-98189247	PrEC	prostate:	n/a
20	chr3:98189197-98189247	K562	blood:	n/a
21	chr3:98189197-98189247	BE2_C	brain:	n/a
22	chr3:98189197-98189247	RPTEC	kidney:	n/a
23	chr3:98189197-98189247	HAEpiC	amniotic membrane:	n/a
24	chr3:98189197-98189247	AG10803	skin:	n/a
25	chr3:98189197-98189247	SKMC	muscle:	n/a
26	chr3:98189197-98189247	NB4	blood:	n/a
27	chr3:98189197-98189247	MCF10A-Er-Src	breast:	n/a
28	chr3:98189197-98189247	Caco-2	colon:	n/a
29	chr3:98189197-98189247	HRPEpiC	eye:	n/a
30	chr3:98189197-98189247	ovcar-3	ovarian:	n/a
31	chr3:98189197-98189247	HNPCEpiC	eye:	n/a
32	chr3:98189197-98189247	HRE	kidney:	n/a
33	chr3:98189197-98189247	HepG2	liver:	n/a
34	chr3:98189197-98189247	HEEpiC	esophagus:	n/a
35	chr3:98189197-98189247	NH-A	brain:	n/a
36	chr3:98189197-98189247	SK-N-MC	brain:	n/a
37	chr3:98189197-98189247	AG09309	skin:	n/a
38	chr3:98189197-98189247	Jurkat	blood:	n/a
39	chr3:98189197-98189247	SK-N-SH	brain:	n/a
40	chr3:98189197-98189247	NHDF-neo	bronchial:	n/a
41	chr3:98189197-98189247	IMR90	lung:	fetal
42	chr3:98189197-98189247	GM06990	blood:	n/a
43	chr3:98189197-98189247	HCF	heart:	n/a
44	chr3:98189197-98189247	AG09319	gingival:	n/a
45	chr3:98189197-98189247	HMEC	breast:	n/a
46	chr3:98189197-98189247	LNCaP	prostate:	n/a
47	chr3:98189197-98189247	Hepatocyte	liver:	n/a
48	chr3:98189197-98189247	SK-N-SH_RA	brain:	n/a
49	chr3:98189197-98189247	H1-hESC	embryonic stem cell:	embryo
50	chr3:98189197-98189247	HUVEC	blood vessel:	n/a

No data

Variant related genes	Relation type
OR5K1	TF binding region
OR5K1	CpG island

Extended variants
information (count: 0)
Associated
traits (count: 59 )

No data

Variant related diseases (count:59)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	21858020	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links