Variant report

Variant	nsv965632
Chromosome Location	chr6:27821900-27825669
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIST1H2BN-1	chr6:27821498-27822512	NONHSAT108411
2	lnc-HIST1H2BN-1	chr6:27823457-27823582	NONHSAT108411

Extended variants
information (count: 118 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:118 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139641978	chr6:27821916-27821917	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs115519675	chr6:27821942-27821943	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs565541985	chr6:27822012-27822013	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs531251869	chr6:27822048-27822049	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs144268175	chr6:27822132-27822133	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs73386626	chr6:27822165-27822166	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs181769328	chr6:27822168-27822169	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs546706471	chr6:27822175-27822176	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs145220758	chr6:27822182-27822183	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs374879312	chr6:27822347-27822348	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs551976004	chr6:27822375-27822376	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs371097876	chr6:27822526-27822527	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186290953	chr6:27822644-27822645	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs190314481	chr6:27822688-27822689	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs556925674	chr6:27822695-27822696	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs567698341	chr6:27822753-27822754	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs536326985	chr6:27822789-27822790	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs553466094	chr6:27822803-27822804	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs578154099	chr6:27822871-27822872	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs573269668	chr6:27822875-27822876	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537853117	chr6:27822913-27822914	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs559196404	chr6:27822929-27822930	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs372122070	chr6:27823015-27823016	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs373199461	chr6:27823016-27823017	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs1058975	chr6:27823053-27823054	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs151223612	chr6:27823073-27823074	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs183050088	chr6:27823138-27823139	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs560848390	chr6:27823149-27823150	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs572424951	chr6:27823156-27823157	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs529729850	chr6:27823203-27823204	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs140372054	chr6:27823231-27823232	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs188227108	chr6:27823234-27823235	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556480313	chr6:27823304-27823305	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375836404	chr6:27823342-27823343	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373702261	chr6:27823430-27823431	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs532111063	chr6:27823447-27823448	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs540369415	chr6:27823449-27823450	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551914540	chr6:27823460-27823461	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs562382493	chr6:27823556-27823557	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs191323771	chr6:27823603-27823604	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs548105436	chr6:27823634-27823635	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs567536163	chr6:27823641-27823642	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs146987885	chr6:27823705-27823706	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs546697689	chr6:27823801-27823802	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs147611009	chr6:27823816-27823817	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539143584	chr6:27823839-27823840	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs142096374	chr6:27823903-27823904	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs369265290	chr6:27823937-27823938	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs542202020	chr6:27823960-27823961	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs182751000	chr6:27823962-27823963	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	19571809	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27808000-27822400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:27808000-27831800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:27808200-27830600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:27813800-27822200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:27814000-27822200	Weak transcription	GM12878-XiMat	blood
6	chr6:27820600-27822000	Weak transcription	K562	blood
7	chr6:27822000-27824000	Strong transcription	K562	blood
8	chr6:27822200-27822400	Enhancers	GM12878-XiMat	blood
9	chr6:27822200-27822800	Enhancers	Primary B cells from cord blood	blood
10	chr6:27822400-27822800	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:27822400-27822800	Flanking Active TSS	GM12878-XiMat	blood
12	chr6:27822800-27831800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:27823600-27824000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:27824000-27828400	Weak transcription	K562	blood
15	chr6:27824000-27831800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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