Variant report

Variant	nsv965648
Chromosome Location	chr6:65911393-65926272
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:74 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184584551	chr6:65911603-65911604	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs576436281	chr6:65911614-65911615	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs545169875	chr6:65911615-65911616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs189499803	chr6:65911633-65911634	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs73441351	chr6:65911683-65911684	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs59775853	chr6:65911694-65911695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs56130540	chr6:65911699-65911700	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs145110491	chr6:65911707-65911708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs74658731	chr6:65911742-65911743	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs538068186	chr6:65911754-65911755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs550380977	chr6:65911759-65911760	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs74508373	chr6:65911793-65911794	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs114263389	chr6:65911832-65911833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs181446426	chr6:65911842-65911843	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs185053429	chr6:65911863-65911864	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs11964615	chr6:65911865-65911866	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs555524186	chr6:65911866-65911867	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570287872	chr6:65911873-65911874	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs190251196	chr6:65911874-65911875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs542764931	chr6:65911922-65911923	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs181747442	chr6:65911964-65911965	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs367623770	chr6:65911991-65911992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs111226378	chr6:65912003-65912004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs539562364	chr6:65912007-65912008	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs841535	chr6:65912032-65912033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs557580144	chr6:65912035-65912036	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs186246829	chr6:65912057-65912058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs560352914	chr6:65912074-65912075	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs373473508	chr6:65912140-65912141	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs191005570	chr6:65912147-65912148	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs593740	chr6:65912154-65912155	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs180785780	chr6:65912221-65912222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs557139112	chr6:65912234-65912235	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs531724799	chr6:65912259-65912260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs551842292	chr6:65912328-65912329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs536666626	chr6:65912364-65912365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs538477	chr6:65912394-65912395	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs534363865	chr6:65912446-65912447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs76548647	chr6:65912462-65912463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs150859474	chr6:65912464-65912465	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs536924094	chr6:65912482-65912483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs555439213	chr6:65912512-65912513	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs575305135	chr6:65912514-65912515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs114927181	chr6:65912534-65912535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs547702269	chr6:65912603-65912604	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs557788769	chr6:65912649-65912650	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs574016450	chr6:65912677-65912678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs541202809	chr6:65912688-65912689	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs56018406	chr6:65912693-65912694	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs186155965	chr6:65912714-65912715	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Epilepsy	20502679	CNVD
Dyslexia	22102821	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Schizophrenia	23813976	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65911600-65913000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:65913000-65913400	ZNF genes & repeats	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links