Variant report

Variant	nsv965655
Chromosome Location	chr6:85892490-85900588
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 231 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:231 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377291842	chr6:85893642-85893643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs571427337	chr6:85893678-85893679	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs191304160	chr6:85893745-85893746	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs370708742	chr6:85893748-85893749	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs532271408	chr6:85893768-85893769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs571358396	chr6:85893770-85893771	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs183842472	chr6:85893810-85893811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs553668739	chr6:85893937-85893938	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs112996831	chr6:85893970-85893971	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs374320969	chr6:85893979-85893980	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs572598974	chr6:85894003-85894004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs543137476	chr6:85894028-85894029	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs555040606	chr6:85894029-85894030	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs112381664	chr6:85894056-85894057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs539452727	chr6:85894095-85894096	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs76523014	chr6:85894099-85894100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs111735622	chr6:85894305-85894306	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs552510196	chr6:85894321-85894322	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs9362141	chr6:85894338-85894339	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs531625402	chr6:85894342-85894343	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs532611259	chr6:85894357-85894358	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs548259672	chr6:85894433-85894434	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs568255772	chr6:85894489-85894490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs541646131	chr6:85894497-85894498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs367822244	chr6:85894498-85894499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs181178614	chr6:85894535-85894536	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs367858851	chr6:85894577-85894578	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs534123197	chr6:85894624-85894625	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs373587112	chr6:85894693-85894694	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs185066003	chr6:85894698-85894699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs571081962	chr6:85894707-85894708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs548659242	chr6:85894709-85894710	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs552518509	chr6:85894722-85894723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs528721153	chr6:85894723-85894724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs539758363	chr6:85894727-85894728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs6937285	chr6:85894779-85894780	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs531164674	chr6:85894795-85894796	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs549829997	chr6:85894800-85894801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs571486549	chr6:85894849-85894850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs538532322	chr6:85894931-85894932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs4053810	chr6:85894932-85894933	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs565868583	chr6:85894939-85894940	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs537884025	chr6:85894950-85894951	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs189944504	chr6:85894951-85894952	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs555052887	chr6:85894971-85894972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs113977532	chr6:85894988-85894989	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs566897160	chr6:85895028-85895029	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs182006318	chr6:85895030-85895031	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs112098526	chr6:85895050-85895051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs574591799	chr6:85895054-85895055	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85893600-85895400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:85894400-85898400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:85895200-85895800	Enhancers	Osteobl	bone
4	chr6:85895200-85897800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:85895400-85895600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:85895400-85898000	Enhancers	NHDF-Ad	bronchial
7	chr6:85895400-85898200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:85895600-85896000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:85895800-85896400	Flanking Active TSS	Osteobl	bone
10	chr6:85895800-85896800	Enhancers	A549	lung
11	chr6:85895800-85897400	Enhancers	HMEC	breast
12	chr6:85896000-85896800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:85896000-85896800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:85896000-85896800	Enhancers	Adipose Nuclei	Adipose
15	chr6:85896000-85897400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:85896000-85897600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:85896000-85898000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:85896000-85898200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:85896400-85898400	Enhancers	Osteobl	bone
20	chr6:85896600-85896800	Enhancers	HUVEC	blood vessel
21	chr6:85896600-85897400	Enhancers	Fetal Muscle Leg	muscle
22	chr6:85896600-85898200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:85896800-85898200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:85896800-85898400	Weak transcription	HUVEC	blood vessel
25	chr6:85896800-85901600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:85897200-85897400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:85897200-85897800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:85897400-85897600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:85897400-85897600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:85897400-85897600	Enhancers	HSMMtube	muscle
31	chr6:85897400-85901600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:85897400-85901600	Weak transcription	HMEC	breast
33	chr6:85897600-85897800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:85897600-85898200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:85897600-85898200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:85897600-85902600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:85897800-85898200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr6:85897800-85898200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:85897800-85898200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:85898000-85901600	Weak transcription	NHDF-Ad	bronchial
41	chr6:85898200-85900200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:85898200-85900400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:85898200-85901000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:85898200-85901600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:85898400-85900600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:85898400-85901200	Weak transcription	Osteobl	bone
47	chr6:85900400-85900600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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