Variant report

Variant	nsv965663
Chromosome Location	chr6:134108594-134110001
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78336246	chr6:134108595-134108596	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs372917943	chr6:134108601-134108602	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575185074	chr6:134108609-134108610	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs532822102	chr6:134108614-134108615	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114156102	chr6:134108641-134108642	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs560725670	chr6:134108645-134108646	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184811483	chr6:134108651-134108652	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs76783676	chr6:134108659-134108660	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs560239046	chr6:134108669-134108670	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1208260	chr6:134108701-134108702	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs552836240	chr6:134108778-134108779	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs369594947	chr6:134108785-134108786	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs532063337	chr6:134108824-134108825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs548553001	chr6:134108837-134108838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs532949480	chr6:134108840-134108841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs534248274	chr6:134108878-134108879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs547554134	chr6:134108884-134108885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570960720	chr6:134109016-134109017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138840183	chr6:134109032-134109033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs558352905	chr6:134109101-134109102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs188852450	chr6:134109122-134109123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs73561601	chr6:134109126-134109127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141949914	chr6:134109150-134109151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs146343730	chr6:134109156-134109157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs181693790	chr6:134109167-134109168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs112255975	chr6:134109179-134109180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559974822	chr6:134109271-134109272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549863002	chr6:134109412-134109413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs114261020	chr6:134109426-134109427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs184706986	chr6:134109433-134109434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs527400368	chr6:134109462-134109463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs139599293	chr6:134109468-134109469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs189684099	chr6:134109503-134109504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs181292914	chr6:134109514-134109515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs62426200	chr6:134109550-134109551	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs76953235	chr6:134109629-134109630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547787240	chr6:134109646-134109647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs62426201	chr6:134109694-134109695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs144346070	chr6:134109715-134109716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs80100443	chr6:134109763-134109764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs567251320	chr6:134109774-134109775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs148759736	chr6:134109797-134109798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551912853	chr6:134109805-134109806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs568702356	chr6:134109820-134109821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs537695365	chr6:134109842-134109843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs557679193	chr6:134109884-134109885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs185976837	chr6:134109890-134109891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569581482	chr6:134109895-134109896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs76275026	chr6:134109920-134109921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs574709131	chr6:134109932-134109933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Gastric cancer	17908304	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21785460	CNVD
Kartagener syndrome	16639409	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134086200-134112400	Weak transcription	Aorta	Aorta
2	chr6:134096000-134112400	Weak transcription	HSMM	muscle
3	chr6:134106800-134112200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:134107600-134111400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:134108400-134108800	Enhancers	HUES48 Cell Line	embryonic stem cell

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