Variant report

Variant	nsv965696
Chromosome Location	chr6:26875833-26883371
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:26878821..26880986-chr6:26986600..26988197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238621	chromatin interactions

Extended variants
information (count: 65 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs146708102	chr6:26878832-26878833	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs561906884	chr6:26878856-26878857	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs10946865	chr6:26878864-26878865	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs541245154	chr6:26878889-26878890	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs12216370	chr6:26878930-26878931	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs140262324	chr6:26878946-26878947	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs549793916	chr6:26879033-26879034	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs545339533	chr6:26879112-26879113	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs143992976	chr6:26879200-26879201	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs184079029	chr6:26879293-26879294	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs200854615	chr6:26879304-26879305	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs188618823	chr6:26879392-26879393	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs146411508	chr6:26879395-26879396	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs201638305	chr6:26879419-26879420	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs370620466	chr6:26879431-26879432	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs140622591	chr6:26879452-26879453	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs56853796	chr6:26879467-26879468	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs540217963	chr6:26879558-26879559	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs537186234	chr6:26879591-26879592	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs191613371	chr6:26879606-26879607	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs183074089	chr6:26879609-26879610	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs12189753	chr6:26879620-26879621	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs138319473	chr6:26879662-26879663	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs572310480	chr6:26879693-26879694	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs540831385	chr6:26879763-26879764	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs370332692	chr6:26879771-26879772	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs149202178	chr6:26879809-26879810	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs543572525	chr6:26879821-26879822	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs563256937	chr6:26879838-26879839	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs113046593	chr6:26879883-26879884	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs187087578	chr6:26879887-26879888	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs542629709	chr6:26879904-26879905	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs559749133	chr6:26879935-26879936	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs528789196	chr6:26879968-26879969	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs544325568	chr6:26879978-26879979	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs551670445	chr6:26880022-26880023	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs571553853	chr6:26880032-26880033	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs530888907	chr6:26880100-26880101	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs562502396	chr6:26880146-26880147	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs3999347	chr6:26880157-26880158	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs9467928	chr6:26880192-26880193	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs560371121	chr6:26880211-26880212	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs553343627	chr6:26880220-26880221	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs563819840	chr6:26880261-26880262	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs191828498	chr6:26880358-26880359	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs557963471	chr6:26880360-26880361	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs527618470	chr6:26880385-26880386	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs143067312	chr6:26880386-26880387	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs6925804	chr6:26880413-26880414	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs557063271	chr6:26880445-26880446	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	21569311	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21509527	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links