Variant report
Variant | nsv965782 |
---|---|
Chromosome Location | chr6:161151104-161152348 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:121)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | BACH1 | chr6:161151957-161152298 | H1-hESC | embryonic stem cell: | n/a | n/a |
2 | CEBPB | chr6:161151605-161151677 | IMR90 | lung: | n/a | chr6:161151652-161151665 |
3 | CTCF | chr6:161152050-161152259 | GM12878 | blood: | n/a | n/a |
4 | CTCF | chr6:161151979-161152380 | K562 | blood: | n/a | n/a |
5 | CTCF | chr6:161152120-161152270 | GM12867 | blood: | n/a | n/a |
6 | CTCF | chr6:161152140-161152290 | HMEC | breast: | n/a | n/a |
7 | CTCF | chr6:161152120-161152270 | MCF-7 | breast: | n/a | n/a |
8 | CTCF | chr6:161152095-161152238 | GM19238 | blood: | n/a | n/a |
9 | CTCF | chr6:161152020-161152170 | AG09319 | gingival: | n/a | n/a |
10 | CTCF | chr6:161152100-161152250 | NB4 | blood: | n/a | n/a |
11 | CTCF | chr6:161152240-161152390 | HEEpiC | esophagus: | n/a | n/a |
12 | CTCF | chr6:161151980-161152345 | K562 | blood: | n/a | n/a |
13 | CTCF | chr6:161152120-161152270 | HepG2 | liver: | n/a | n/a |
14 | CTCF | chr6:161152080-161152230 | HPAF | blood vessel: | n/a | n/a |
15 | CTCF | chr6:161152060-161152210 | Hela-S3 | cervix: | n/a | n/a |
16 | CTCF | chr6:161152180-161152330 | GM12872 | blood: | n/a | n/a |
17 | CTCF | chr6:161152060-161152210 | HVMF | connective: | n/a | n/a |
18 | CTCF | chr6:161152040-161152190 | K562 | blood: | n/a | n/a |
19 | CTCF | chr6:161152040-161152190 | HEK293 | kidney: | n/a | n/a |
20 | CTCF | chr6:161152120-161152270 | GM12864 | blood: | n/a | n/a |
21 | CTCF | chr6:161152080-161152230 | HPF | lung: | n/a | n/a |
22 | CTCF | chr6:161152080-161152230 | Caco-2 | colon: | n/a | n/a |
23 | CTCF | chr6:161152060-161152210 | GM12872 | blood: | n/a | n/a |
24 | CTCF | chr6:161152020-161152170 | HCM | heart: | n/a | n/a |
25 | CTCF | chr6:161152079-161152250 | A549 | lung: | n/a | n/a |
26 | CTCF | chr6:161152100-161152250 | GM12871 | blood: | n/a | n/a |
27 | CTCF | chr6:161152060-161152210 | HPF | lung: | n/a | n/a |
28 | CTCF | chr6:161152100-161152250 | GM12870 | blood: | n/a | n/a |
29 | CTCF | chr6:161151900-161152050 | BE2_C | brain: | n/a | n/a |
30 | CTCF | chr6:161152080-161152230 | NHEK | skin: | n/a | n/a |
31 | CTCF | chr6:161152080-161152230 | GM12870 | blood: | n/a | n/a |
32 | CTCF | chr6:161152080-161152230 | HAc | cerebellar: | n/a | n/a |
33 | CTCF | chr6:161152060-161152210 | WERI-Rb-1 | eye: | n/a | n/a |
34 | CTCF | chr6:161152200-161152350 | NHDF-neo | bronchial: | n/a | n/a |
35 | CTCF | chr6:161152120-161152270 | GM12878 | blood: | n/a | n/a |
36 | CTCF | chr6:161152120-161152270 | GM12865 | blood: | n/a | n/a |
37 | CTCF | chr6:161152093-161152217 | GM20000 | blood: | n/a | n/a |
38 | CTCF | chr6:161152140-161152290 | GM12871 | blood: | n/a | n/a |
39 | CTCF | chr6:161152140-161152290 | HCT-116 | colon: | n/a | n/a |
40 | CTCF | chr6:161152080-161152230 | AG04450 | lung: | n/a | n/a |
41 | CTCF | chr6:161152040-161152190 | SAEC | small airway: | n/a | n/a |
42 | CTCF | chr6:161152140-161152290 | HepG2 | liver: | n/a | n/a |
43 | CTCF | chr6:161152140-161152290 | GM12878 | blood: | n/a | n/a |
44 | CTCF | chr6:161152100-161152250 | GM12873 | blood: | n/a | n/a |
45 | CTCF | chr6:161152040-161152190 | GM12875 | blood: | n/a | n/a |
46 | CTCF | chr6:161152020-161152170 | Hela-S3 | cervix: | n/a | n/a |
47 | CTCF | chr6:161152100-161152250 | AoAF | blood vessel: | n/a | n/a |
48 | CTCF | chr6:161151981-161152322 | K562 | blood: | n/a | n/a |
49 | CTCF | chr6:161152101-161152194 | Spleen_OC | spleen: | n/a | n/a |
50 | CTCF | chr6:161152040-161152190 | HCPEpiC | choroid plexus: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
PLG | TF binding region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs150234513 | chr6:161151148-161151149 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs79337140 | chr6:161151165-161151166 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs377076151 | chr6:161151169-161151170 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs568105153 | chr6:161151193-161151194 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs538808345 | chr6:161151197-161151198 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs3798901 | chr6:161151200-161151201 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs575461228 | chr6:161151205-161151206 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs543886956 | chr6:161151220-161151221 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs186800032 | chr6:161151234-161151235 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs371780479 | chr6:161151248-161151249 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs192808155 | chr6:161151337-161151338 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs184310637 | chr6:161151367-161151368 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs532630867 | chr6:161151390-161151391 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs4252122 | chr6:161151456-161151457 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
15 | rs146400667 | chr6:161151529-161151530 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs531982705 | chr6:161151544-161151545 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs189959730 | chr6:161151549-161151550 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs548299009 | chr6:161151601-161151602 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs4252123 | chr6:161151620-161151621 | Strong transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs568505461 | chr6:161151666-161151667 | Strong transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs534182632 | chr6:161151682-161151683 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs181178361 | chr6:161151711-161151712 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs543993532 | chr6:161151756-161151757 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs138197354 | chr6:161151813-161151814 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs372752831 | chr6:161151823-161151824 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs116189457 | chr6:161151838-161151839 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs373540899 | chr6:161151927-161151928 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs570301079 | chr6:161151947-161151948 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs538875551 | chr6:161151951-161151952 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs185351722 | chr6:161151961-161151962 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs73784945 | chr6:161151968-161151969 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
32 | rs188784418 | chr6:161151995-161151996 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs572284335 | chr6:161151997-161151998 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs4252124 | chr6:161152021-161152022 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs539825591 | chr6:161152026-161152027 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs559831045 | chr6:161152030-161152031 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs139071351 | chr6:161152085-161152086 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs149909079 | chr6:161152107-161152108 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs370807852 | chr6:161152134-161152135 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs574500945 | chr6:161152156-161152157 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs371661937 | chr6:161152161-161152162 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs36089164 | chr6:161152165-161152166 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs1804181 | chr6:161152184-161152185 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs116573785 | chr6:161152206-161152207 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs142565890 | chr6:161152211-161152212 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs374635068 | chr6:161152216-161152217 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs374995543 | chr6:161152220-161152221 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs368155641 | chr6:161152221-161152222 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs4252125 | chr6:161152240-161152241 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
50 | rs4699 | chr6:161152257-161152258 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Ependymoma | 16718352 | CNVD |
Gastric cancer | 17908304 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 16272173 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Malignant melanoma | 18718029 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 17603634 | CNVD |
Developmental delay | 19490664 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Leukemia | 18688285 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Prostate cancer | 18632612 | CNVD |
Lung cancer | 18438408 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
Esophageal cancer | 21851588 | CNVD |
T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
Breast cancer | 17133270 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Developmental delay | 21147756 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Chordoma | 18071362 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 21509527 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Autism | 22241247 | CNVD |
Breast cancer | 16397240 | CNVD |
Atherosclerosis | 21956041 | CNVD |
Maculopathy | 20981449 | CNVD |
Retinoblastoma | 22278416 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Uveal melanoma | 20484589 | CNVD |
Glioblastoma multiforme | 19435819 | CNVD |
Astrocytoma | 16205629 | CNVD |
Parkinson disease | 17160897 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:161140800-161175200 | Strong transcription | Liver | Liver |