Variant report

Variant	nsv965786
Chromosome Location	chr6:167112978-167114881
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537699569	chr6:167113024-167113025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs549681691	chr6:167113038-167113039	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs570884208	chr6:167113041-167113042	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571490045	chr6:167113064-167113065	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs538814084	chr6:167113074-167113075	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs538277714	chr6:167113178-167113179	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs138699915	chr6:167113185-167113186	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs373216861	chr6:167113190-167113191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs149545274	chr6:167113191-167113192	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs16900973	chr6:167113245-167113246	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs144105714	chr6:167113272-167113273	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs544093003	chr6:167113315-167113316	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs369341660	chr6:167113328-167113329	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs373071765	chr6:167113339-167113340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs559314295	chr6:167113417-167113418	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs577287822	chr6:167113448-167113449	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs182085309	chr6:167113450-167113451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs559785178	chr6:167113480-167113481	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs140527519	chr6:167113510-167113511	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs536651004	chr6:167113549-167113550	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs542310374	chr6:167113557-167113558	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs560876785	chr6:167113564-167113565	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs555340489	chr6:167113600-167113601	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs112207784	chr6:167113675-167113676	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs549644851	chr6:167113685-167113686	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs191914046	chr6:167113691-167113692	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs531973681	chr6:167113716-167113717	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs553269584	chr6:167113730-167113731	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs144360480	chr6:167113763-167113764	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs577937333	chr6:167113780-167113781	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs535927993	chr6:167113842-167113843	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs6934715	chr6:167113843-167113844	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs570233627	chr6:167113941-167113942	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs373453473	chr6:167113968-167113969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs565102391	chr6:167113969-167113970	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs76052771	chr6:167113979-167113980	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs539107212	chr6:167113980-167113981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs537668237	chr6:167113981-167113982	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs533077686	chr6:167113988-167113989	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs183299953	chr6:167113989-167113990	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs186651259	chr6:167113992-167113993	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs377483860	chr6:167114010-167114011	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs541410930	chr6:167114026-167114027	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs551289030	chr6:167114033-167114034	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs111411049	chr6:167114048-167114049	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs6911624	chr6:167114049-167114050	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs542699896	chr6:167114060-167114061	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs541932273	chr6:167114108-167114109	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs563471616	chr6:167114173-167114174	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs6913194	chr6:167114181-167114182	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ependymoma	20639864	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167102200-167116000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:167102200-167116600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:167102200-167117600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:167106000-167113000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:167109200-167117000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:167112600-167113800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:167112800-167115200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:167112800-167116600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:167113600-167115200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:167113600-167115200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:167114000-167114800	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:167114000-167115000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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