Variant report

Variant	nsv965936
Chromosome Location	chr20:24781604-24785543
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24778826..24780956-chr20:24782590..24785406,2	MCF-7	breast:
2	chr20:24780843..24782788-chr20:24791141..24793003,2	MCF-7	breast:

Extended variants
information (count: 195 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:195 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531464429	chr20:24781623-24781624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs7262773	chr20:24781638-24781639	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs531015803	chr20:24781642-24781643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs7262621	chr20:24781653-24781654	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs553591307	chr20:24781675-24781676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145966610	chr20:24781676-24781677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs116524239	chr20:24781700-24781701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs564594883	chr20:24781708-24781709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs538754155	chr20:24781766-24781767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs186478516	chr20:24781789-24781790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs370647289	chr20:24781871-24781872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs575611890	chr20:24781874-24781875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs538127238	chr20:24781890-24781891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs112868439	chr20:24781910-24781911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs143351015	chr20:24781943-24781944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs540818096	chr20:24781953-24781954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs560714898	chr20:24781954-24781955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs370391119	chr20:24781963-24781964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs576964624	chr20:24781966-24781967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs150763951	chr20:24781982-24781983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs562308665	chr20:24781986-24781987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs73903961	chr20:24782086-24782087	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs192107241	chr20:24782090-24782091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs73903962	chr20:24782091-24782092	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs527630245	chr20:24782147-24782148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs73903963	chr20:24782155-24782156	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs183639233	chr20:24782164-24782165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs111627929	chr20:24782218-24782219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552660600	chr20:24782235-24782236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs569277709	chr20:24782275-24782276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs373183500	chr20:24782362-24782363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186939436	chr20:24782377-24782378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs6083624	chr20:24782385-24782386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs377383033	chr20:24782421-24782422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536192255	chr20:24782489-24782490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs226698	chr20:24782490-24782491	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs139206861	chr20:24782504-24782505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs370965077	chr20:24782511-24782512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs550885605	chr20:24782535-24782536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs539507813	chr20:24782584-24782585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs562306207	chr20:24782608-24782609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs546449882	chr20:24782611-24782612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529696650	chr20:24782614-24782615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs562590264	chr20:24782680-24782681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs149946042	chr20:24782691-24782692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs145194755	chr20:24782692-24782693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs191323629	chr20:24782711-24782712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs182455157	chr20:24782721-24782722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs527544965	chr20:24782748-24782749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs547306606	chr20:24782813-24782814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Breast cancer	16608533	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17133270	CNVD
Thrombophilia	17576883	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Hepatocellular carcinoma	22174799	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Oral cancer	21386901	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24774000-24783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24777200-24791400	Weak transcription	Spleen	Spleen
3	chr20:24781000-24783600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:24783000-24783200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:24783200-24790400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:24783600-24784600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:24784600-24785000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:24785000-24785600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:24785200-24785800	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links