Variant report

Variant	nsv966207
Chromosome Location	chr4:102659677-102669522
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102668209..102669910-chr4:102674187..102676043,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192257788	chr4:102667900-102667901	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs574877534	chr4:102667931-102667932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs111358600	chr4:102667935-102667936	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs554221140	chr4:102667941-102667942	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs572473052	chr4:102668002-102668003	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs183894239	chr4:102668012-102668013	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs141494158	chr4:102668037-102668038	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs150401563	chr4:102668038-102668039	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs189360130	chr4:102668052-102668053	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs181972227	chr4:102668106-102668107	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs114848089	chr4:102668127-102668128	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs547098740	chr4:102668218-102668219	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs559365429	chr4:102668226-102668227	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs532894310	chr4:102668275-102668276	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs552691318	chr4:102668338-102668339	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs138109163	chr4:102668362-102668363	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs184353932	chr4:102668363-102668364	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs543173351	chr4:102668407-102668408	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs149532298	chr4:102668498-102668499	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs535816420	chr4:102668533-102668534	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs555668055	chr4:102668543-102668544	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs564417348	chr4:102668647-102668648	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs189968148	chr4:102668679-102668680	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs572463771	chr4:102668681-102668682	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs182144338	chr4:102668684-102668685	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs539546741	chr4:102668695-102668696	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs186286329	chr4:102668738-102668739	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs557869819	chr4:102668740-102668741	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs191523550	chr4:102668741-102668742	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs143143592	chr4:102668747-102668748	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs115700191	chr4:102668748-102668749	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs180730530	chr4:102668767-102668768	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs72602429	chr4:102668803-102668804	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs5860687	chr4:102668804-102668805	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs112002935	chr4:102668805-102668806	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs546957961	chr4:102668883-102668884	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs550701528	chr4:102668928-102668929	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs540980252	chr4:102668964-102668965	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs185132733	chr4:102669004-102669005	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs532992280	chr4:102669023-102669024	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs72917042	chr4:102669058-102669059	ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs535924633	chr4:102669111-102669112	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs563407095	chr4:102669112-102669113	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs532802222	chr4:102669175-102669176	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs11296086	chr4:102669179-102669180	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs386677882	chr4:102669184-102669185	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs190725922	chr4:102669185-102669186	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs550057512	chr4:102669192-102669193	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs550421944	chr4:102669197-102669198	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs569828738	chr4:102669230-102669231	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	18000384	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
myeloid cancer	21057493	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102667800-102669600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:102668000-102668200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
3	chr4:102668200-102669800	Enhancers	Primary B cells from peripheral blood	blood
4	chr4:102669400-102669800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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