Variant report

Variant	nsv966336
Chromosome Location	chr4:165932824-165935714
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:165932691-165932868	MCF10A-Er-Src	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM61-6	chr4:165933518-165933997	NONHSAT099100

Variant related genes	Relation type
ENSG00000250887	TF binding region
ENSG00000240674	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs59481311	chr4:165932825-165932826	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs77621676	chr4:165932860-165932861	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs577972925	chr4:165933563-165933564	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs1914856	chr4:165933576-165933577	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs1914857	chr4:165933590-165933591	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs554005090	chr4:165933613-165933614	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs572193755	chr4:165933633-165933634	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs147433403	chr4:165933639-165933640	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs200427026	chr4:165933641-165933642	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs201055321	chr4:165933642-165933643	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs528136570	chr4:165933648-165933649	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs561147471	chr4:165933691-165933692	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs1914858	chr4:165933697-165933698	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs139728025	chr4:165933724-165933725	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs4094237	chr4:165933725-165933726	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs532817516	chr4:165933751-165933752	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs370420761	chr4:165933764-165933765	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs145049922	chr4:165933780-165933781	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs527377371	chr4:165933857-165933858	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs114301670	chr4:165933869-165933870	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs115382776	chr4:165933870-165933871	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs147568972	chr4:165933887-165933888	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs549831866	chr4:165933904-165933905	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs190894644	chr4:165933907-165933908	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs531234427	chr4:165933911-165933912	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs538693275	chr4:165933930-165933931	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs554129282	chr4:165933940-165933941	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs140687988	chr4:165933959-165933960	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs536354562	chr4:165933963-165933964	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs183400492	chr4:165933964-165933965	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs576248070	chr4:165933967-165933968	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs113087308	chr4:165933993-165933994	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Glioblastoma multiforme	22286061	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16750200	CNVD
Colorectal cancer	16774939	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
intellectual deficit	22127048	CNVD
abnormal development	18461090	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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