Variant report

Variant	nsv966367
Chromosome Location	chr4:119348682-119352932
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDST3-3	chr4:119349734-119350000	XLOC_003661
2	lnc-NDST3-3	chr4:119348948-119349038	XLOC_003661
3	lnc-NDST3-3	chr4:119350138-119350584	XLOC_003661

Extended variants
information (count: 28 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534100722	chr4:119348948-119348949	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs577391577	chr4:119348981-119348982	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs185164372	chr4:119349010-119349011	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs58467651	chr4:119349011-119349012	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs57800055	chr4:119349013-119349014	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs545689032	chr4:119349736-119349737	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs567893676	chr4:119349805-119349806	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs536446966	chr4:119349825-119349826	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs555459330	chr4:119349843-119349844	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs575427155	chr4:119349908-119349909	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs146535606	chr4:119349909-119349910	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs141222791	chr4:119349916-119349917	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs577843740	chr4:119349946-119349947	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs540561513	chr4:119349953-119349954	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs372182863	chr4:119350160-119350161	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs79466896	chr4:119350209-119350210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs181884268	chr4:119350213-119350214	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs573733349	chr4:119350219-119350220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs145035356	chr4:119350241-119350242	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs4001488	chr4:119350243-119350244	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs531716308	chr4:119350267-119350268	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs551342392	chr4:119350312-119350313	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs11943668	chr4:119350450-119350451	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs186526304	chr4:119350462-119350463	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs4001489	chr4:119350473-119350474	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs4001490	chr4:119350511-119350512	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs548019498	chr4:119350515-119350516	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs1812170	chr4:119350563-119350564	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:76)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Neuroblastoma	21899760	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Autism	19246517	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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