Variant report

Variant	nsv966696
Chromosome Location	chr6:63427536-63433985
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 174 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:174 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184409796	chr6:63427540-63427541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs2752974	chr6:63427664-63427665	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs548427640	chr6:63427675-63427676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs570275296	chr6:63427685-63427686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs537618587	chr6:63427691-63427692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs565029011	chr6:63427694-63427695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs146735604	chr6:63427700-63427701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576852091	chr6:63427713-63427714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs532459654	chr6:63427733-63427734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs374257276	chr6:63427742-63427743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs550937487	chr6:63427752-63427753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs534468047	chr6:63427759-63427760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs377022929	chr6:63427761-63427762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs368914929	chr6:63427801-63427802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs552997589	chr6:63427821-63427822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs189289853	chr6:63427829-63427830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs373010652	chr6:63427830-63427831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs377041177	chr6:63427839-63427840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs541866261	chr6:63427843-63427844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs561821574	chr6:63427870-63427871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182134151	chr6:63427900-63427901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs139279372	chr6:63427912-63427913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149725385	chr6:63427931-63427932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs564171673	chr6:63427939-63427940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs375193880	chr6:63427990-63427991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs187667685	chr6:63428050-63428051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs569131858	chr6:63428072-63428073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541085714	chr6:63428093-63428094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs559423062	chr6:63428110-63428111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs371225221	chr6:63428112-63428113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs190353250	chr6:63428130-63428131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs144172827	chr6:63428148-63428149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570315276	chr6:63428235-63428236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529944599	chr6:63428246-63428247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs146513934	chr6:63428249-63428250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201737114	chr6:63428260-63428261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs397788229	chr6:63428268-63428269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs530098516	chr6:63428275-63428276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs116338981	chr6:63428277-63428278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs535244694	chr6:63428349-63428350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375858655	chr6:63428401-63428402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs181709138	chr6:63428402-63428403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186011003	chr6:63428415-63428416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2752976	chr6:63428429-63428430	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs575490591	chr6:63428431-63428432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372241662	chr6:63428444-63428445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545818922	chr6:63428445-63428446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs558041163	chr6:63428490-63428491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs370675836	chr6:63428498-63428499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572904560	chr6:63428515-63428516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63424400-63431600	Weak transcription	Psoas Muscle	Psoas
2	chr6:63431400-63431800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:63431600-63431800	ZNF genes & repeats	Psoas Muscle	Psoas

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