Variant report

Variant	nsv966697
Chromosome Location	chr6:65064520-65070579
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:65070131..65072480-chr6:65075607..65077474,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575570859	chr6:65066626-65066627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs569639908	chr6:65066629-65066630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs192001655	chr6:65066653-65066654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs373342557	chr6:65066655-65066656	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs557593900	chr6:65066658-65066659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs73767535	chr6:65066723-65066724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs544193620	chr6:65066769-65066770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs184154089	chr6:65066781-65066782	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs561458247	chr6:65066808-65066809	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs146913173	chr6:65066856-65066857	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs139219184	chr6:65066895-65066896	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs112439602	chr6:65066940-65066941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs73767537	chr6:65067002-65067003	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs537232922	chr6:65067028-65067029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs552919891	chr6:65067113-65067114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs376741992	chr6:65067219-65067220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs35891882	chr6:65067220-65067221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs55747236	chr6:65067223-65067224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200193074	chr6:65067224-65067225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs201307908	chr6:65067226-65067227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571110822	chr6:65067278-65067279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs528704250	chr6:65067290-65067291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs372315826	chr6:65067313-65067314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574054282	chr6:65067324-65067325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79448207	chr6:65067328-65067329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs637362	chr6:65067351-65067352	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs535601569	chr6:65067357-65067358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs143178006	chr6:65067381-65067382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs10944484	chr6:65067404-65067405	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs150881344	chr6:65067412-65067413	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs571468157	chr6:65067457-65067458	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs10806431	chr6:65067460-65067461	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs139282952	chr6:65067485-65067486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs112236264	chr6:65067492-65067493	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs539539071	chr6:65067511-65067512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs115101156	chr6:65067527-65067528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs188581777	chr6:65067531-65067532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs78780450	chr6:65067568-65067569	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs626316	chr6:65067582-65067583	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs114547207	chr6:65067585-65067586	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs528840775	chr6:65067617-65067618	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs73453243	chr6:65067636-65067637	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs191486486	chr6:65067643-65067644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs529451872	chr6:65067676-65067677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs550814254	chr6:65067765-65067766	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs575883604	chr6:65067810-65067811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs625112	chr6:65067813-65067814	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs561326043	chr6:65067832-65067833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs551403938	chr6:65067948-65067949	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs528940910	chr6:65067956-65067957	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Epilepsy	20502679	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65066600-65067000	Enhancers	Adipose Nuclei	Adipose
2	chr6:65067000-65067400	Weak transcription	Adipose Nuclei	Adipose
3	chr6:65067400-65068000	Enhancers	Adipose Nuclei	Adipose

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