Variant report

Variant	nsv966714
Chromosome Location	chr7:40576878-40581679
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf11-3	chr7:40577726-40579281	ENSG00000203446.2

Extended variants
information (count: 161 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:161 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536934045	chr7:40576878-40576879	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs547218993	chr7:40576887-40576888	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566928627	chr7:40576958-40576959	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs199695136	chr7:40577027-40577028	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558797100	chr7:40577047-40577048	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs374210629	chr7:40577098-40577099	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs552350003	chr7:40577128-40577129	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575667006	chr7:40577236-40577237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs537852736	chr7:40577257-40577258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542414257	chr7:40577279-40577280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554503030	chr7:40577314-40577315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs189975042	chr7:40577324-40577325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs540135832	chr7:40577331-40577332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs570569407	chr7:40577363-40577364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs182236341	chr7:40577376-40577377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs576950242	chr7:40577390-40577391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs554413128	chr7:40577393-40577394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs73308263	chr7:40577494-40577495	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs184898183	chr7:40577501-40577502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs531392348	chr7:40577509-40577510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541884912	chr7:40577637-40577638	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561662816	chr7:40577646-40577647	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530445477	chr7:40577657-40577658	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs553550082	chr7:40577667-40577668	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs146635299	chr7:40577678-40577679	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368218581	chr7:40577726-40577727	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs190764227	chr7:40577748-40577749	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs532619438	chr7:40577789-40577790	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs111347678	chr7:40577812-40577813	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs551325713	chr7:40577840-40577841	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs569019095	chr7:40577961-40577962	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs370694038	chr7:40578037-40578038	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs184207965	chr7:40578079-40578080	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs554592991	chr7:40578122-40578123	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs141365609	chr7:40578156-40578157	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs143784846	chr7:40578267-40578268	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs116681231	chr7:40578281-40578282	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs577018692	chr7:40578284-40578285	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs145522544	chr7:40578305-40578306	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs188711778	chr7:40578322-40578323	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs148843264	chr7:40578327-40578328	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs541923830	chr7:40578442-40578443	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs367702900	chr7:40578452-40578453	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs568524179	chr7:40578490-40578491	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs565112624	chr7:40578499-40578500	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs536181287	chr7:40578519-40578520	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs193182549	chr7:40578568-40578569	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs557209620	chr7:40578602-40578603	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs560627045	chr7:40578603-40578604	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs182925327	chr7:40578604-40578605	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	22495311	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	17237825	CNVD
Breast cancer	17899364	CNVD
Breast cancer	20409316	CNVD
Acute monocytic leukemia	16498392	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	19455253	CNVD
Glioblastoma multiforme	22286061	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Gastric cancer	24379144	CNVD
small cell lung cancer	20016488	CNVD
abnormal development	18461090	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40562200-40577800	Weak transcription	HSMM	muscle
2	chr7:40567600-40584600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:40568000-40581200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:40572400-40580800	Weak transcription	NHDF-Ad	bronchial
5	chr7:40575800-40577200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:40576600-40580000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:40576800-40583800	Weak transcription	Aorta	Aorta
8	chr7:40577200-40577600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:40577600-40578200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:40577800-40578200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:40578200-40586400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:40580000-40582000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:40580200-40580400	Enhancers	Ovary	ovary
14	chr7:40580800-40581800	Enhancers	Osteobl	bone
15	chr7:40580800-40582000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:40580800-40582000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:40580800-40582000	Weak transcription	Ovary	ovary
18	chr7:40580800-40582800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:40580800-40587000	Enhancers	NHDF-Ad	bronchial
20	chr7:40581000-40581800	Enhancers	Adipose Nuclei	Adipose
21	chr7:40581200-40583800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:40581400-40584600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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