Variant report

Variant	nsv966794
Chromosome Location	chr7:56358052-56359153
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUMF2-10	chr7:56357589-56359118	NONHSAT120740

Extended variants
information (count: 30 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191082025	chr7:56358160-56358161	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs148378733	chr7:56358177-56358178	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs143304586	chr7:56358196-56358197	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs183268970	chr7:56358215-56358216	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs10252858	chr7:56358298-56358299	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs538619338	chr7:56358307-56358308	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs374016063	chr7:56358320-56358321	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs113393833	chr7:56358322-56358323	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs534993500	chr7:56358399-56358400	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs537299347	chr7:56358422-56358423	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs17172525	chr7:56358435-56358436	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs116305893	chr7:56358456-56358457	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs576541965	chr7:56358493-56358494	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs189964728	chr7:56358512-56358513	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs182517848	chr7:56358533-56358534	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs59913532	chr7:56358594-56358595	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs544633262	chr7:56358619-56358620	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs564059290	chr7:56358704-56358705	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs549896969	chr7:56358724-56358725	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs188428612	chr7:56358739-56358740	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs543242065	chr7:56358750-56358751	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs561122701	chr7:56358777-56358778	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs528632448	chr7:56358786-56358787	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs546701172	chr7:56358832-56358833	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs192700397	chr7:56358862-56358863	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs537406825	chr7:56358900-56358901	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs532540202	chr7:56358942-56358943	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs183708879	chr7:56358980-56358981	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs569973297	chr7:56359052-56359053	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs187252788	chr7:56359108-56359109	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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