Variant report

Variant	nsv966803
Chromosome Location	chr7:57731883-57740775
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 384 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:384 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200841851	chr7:57733008-57733009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs200371840	chr7:57733014-57733015	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs4526308	chr7:57733019-57733020	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs201884955	chr7:57733020-57733021	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs199544352	chr7:57733021-57733022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs77065935	chr7:57733063-57733064	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs529082892	chr7:57733071-57733072	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs139123077	chr7:57733083-57733084	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs4617105	chr7:57733094-57733095	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs547229903	chr7:57733099-57733100	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs373303881	chr7:57733127-57733128	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs565889605	chr7:57733134-57733135	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs534251259	chr7:57733140-57733141	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs552725711	chr7:57733142-57733143	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs75452355	chr7:57733153-57733154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs75887232	chr7:57733161-57733162	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs368720968	chr7:57733172-57733173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs118134839	chr7:57733203-57733204	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs368621522	chr7:57733205-57733206	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs569736132	chr7:57733223-57733224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs201970634	chr7:57733226-57733227	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs556803675	chr7:57733251-57733252	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs111531113	chr7:57733274-57733275	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs142767489	chr7:57733293-57733294	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs374863395	chr7:57733297-57733298	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs8180822	chr7:57733302-57733303	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs536147029	chr7:57733308-57733309	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs143291655	chr7:57733312-57733313	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs189543647	chr7:57733321-57733322	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs79094215	chr7:57733322-57733323	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs111369613	chr7:57733356-57733357	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs4108568	chr7:57733380-57733381	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs563872797	chr7:57733403-57733404	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs73360937	chr7:57733422-57733423	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs575981258	chr7:57733447-57733448	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs377304056	chr7:57733448-57733449	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs200002016	chr7:57733460-57733461	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs114302243	chr7:57733473-57733474	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs561728552	chr7:57733477-57733478	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs73360938	chr7:57733490-57733491	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs201268896	chr7:57733491-57733492	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs202026789	chr7:57733492-57733493	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs202065865	chr7:57733500-57733501	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs547684279	chr7:57733502-57733503	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs112404011	chr7:57733533-57733534	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs113440647	chr7:57733534-57733535	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs559560390	chr7:57733536-57733537	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs12671000	chr7:57733545-57733546	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs533190264	chr7:57733564-57733565	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs73115659	chr7:57733565-57733566	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57733000-57735400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr7:57734800-57735200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr7:57739000-57739400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr7:57739400-57739600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:57739600-57741800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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