Variant report

Variant	nsv966804
Chromosome Location	chr7:57740775-57742272
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:89 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76560188	chr7:57740782-57740783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs576450118	chr7:57740783-57740784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs79628857	chr7:57740794-57740795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs76569697	chr7:57740800-57740801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201084081	chr7:57740808-57740809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs78934493	chr7:57740820-57740821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs543531814	chr7:57740834-57740835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200417982	chr7:57740836-57740837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs561726675	chr7:57740845-57740846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs73115670	chr7:57740872-57740873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs199828361	chr7:57740922-57740923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs79207348	chr7:57740931-57740932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs75564029	chr7:57740951-57740952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs190194500	chr7:57740969-57740970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs78256013	chr7:57740977-57740978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs74798432	chr7:57740993-57740994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs547677233	chr7:57740994-57740995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs182458005	chr7:57741009-57741010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs533462915	chr7:57741026-57741027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs186007618	chr7:57741054-57741055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs375600637	chr7:57741056-57741057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs563200728	chr7:57741080-57741081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs576658112	chr7:57741082-57741083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs570169057	chr7:57741085-57741086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs78196413	chr7:57741093-57741094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs537118998	chr7:57741098-57741099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549125485	chr7:57741118-57741119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs374953955	chr7:57741140-57741141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs374926468	chr7:57741173-57741174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs62451420	chr7:57741236-57741237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs369243990	chr7:57741245-57741246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs62451421	chr7:57741253-57741254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs534646241	chr7:57741284-57741285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs201667451	chr7:57741285-57741286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201512991	chr7:57741288-57741289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs62451422	chr7:57741301-57741302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs75194557	chr7:57741323-57741324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200768689	chr7:57741327-57741328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs558960984	chr7:57741351-57741352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs199897267	chr7:57741354-57741355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs201042951	chr7:57741357-57741358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375472207	chr7:57741361-57741362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs77097013	chr7:57741376-57741377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs553299933	chr7:57741389-57741390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs79620250	chr7:57741401-57741402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs577820502	chr7:57741408-57741409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs62451423	chr7:57741411-57741412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs538573130	chr7:57741421-57741422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs75516640	chr7:57741440-57741441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs76348373	chr7:57741447-57741448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57739600-57741800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:57741800-57742000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links