Variant report

Variant	nsv966805
Chromosome Location	chr7:61054332-61057367
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 455 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:455 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200905526	chr7:61054335-61054336	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs111211541	chr7:61054336-61054337	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs536981237	chr7:61054340-61054341	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs111211542	chr7:61054343-61054344	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs370164849	chr7:61054344-61054345	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs368064223	chr7:61054349-61054350	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs201905576	chr7:61054350-61054351	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs370720163	chr7:61054352-61054353	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs566880431	chr7:61054353-61054354	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs199504159	chr7:61054362-61054363	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs368614615	chr7:61054367-61054368	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs372360898	chr7:61054368-61054369	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs201776987	chr7:61054370-61054371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs373663104	chr7:61054375-61054376	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs76354741	chr7:61054376-61054377	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs200109469	chr7:61054381-61054382	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs367802121	chr7:61054383-61054384	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs534003453	chr7:61054385-61054386	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs74883605	chr7:61054386-61054387	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs559018761	chr7:61054389-61054390	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs201561283	chr7:61054396-61054397	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs371659908	chr7:61054400-61054401	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs142382606	chr7:61054401-61054402	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs28972383	chr7:61054411-61054412	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs371363821	chr7:61054412-61054413	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs576581829	chr7:61054415-61054416	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs543998181	chr7:61054416-61054417	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs78957314	chr7:61054420-61054421	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs574372341	chr7:61054421-61054422	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs76350774	chr7:61054422-61054423	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs77320287	chr7:61054428-61054429	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs28970693	chr7:61054431-61054432	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs559862881	chr7:61054433-61054434	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs375181955	chr7:61054437-61054438	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs527294084	chr7:61054438-61054439	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs368477416	chr7:61054453-61054454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs545536780	chr7:61054461-61054462	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs141630202	chr7:61054462-61054463	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs199827351	chr7:61054485-61054486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs112732406	chr7:61054488-61054489	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs551181543	chr7:61054489-61054490	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs569501746	chr7:61054490-61054491	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs77507228	chr7:61054497-61054498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs530390053	chr7:61054500-61054501	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs548879314	chr7:61054505-61054506	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs201177677	chr7:61054514-61054515	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs140206273	chr7:61054515-61054516	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs566712261	chr7:61054523-61054524	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs74377640	chr7:61054524-61054525	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs534200455	chr7:61054528-61054529	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61054200-61055800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
2	chr7:61054200-61055800	ZNF genes & repeats	Liver	Liver
3	chr7:61054200-61055800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr7:61054200-61056000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:61054200-61056000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr7:61054400-61055600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
7	chr7:61054400-61055600	ZNF genes & repeats	HepG2	liver
8	chr7:61054400-61055800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr7:61054400-61055800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr7:61054400-61055800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr7:61054400-61055800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:61054400-61055800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:61054400-61055800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:61054400-61055800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
15	chr7:61054400-61055800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
16	chr7:61054400-61055800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
17	chr7:61054400-61055800	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr7:61054400-61055800	ZNF genes & repeats	Brain Anterior Caudate	brain
19	chr7:61054400-61055800	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr7:61054400-61055800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:61054400-61055800	ZNF genes & repeats	Brain Substantia Nigra	brain
22	chr7:61054400-61055800	ZNF genes & repeats	Colon Smooth Muscle	Colon
23	chr7:61054400-61055800	ZNF genes & repeats	Fetal Brain Male	brain
24	chr7:61054400-61055800	ZNF genes & repeats	Fetal Heart	heart
25	chr7:61054400-61055800	ZNF genes & repeats	Fetal Kidney	kidney
26	chr7:61054400-61055800	ZNF genes & repeats	Fetal Lung	lung
27	chr7:61054400-61055800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
28	chr7:61054400-61055800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
29	chr7:61054400-61055800	ZNF genes & repeats	GM12878-XiMat	blood
30	chr7:61054400-61055800	ZNF genes & repeats	HUVEC	blood vessel
31	chr7:61054400-61055800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr7:61054400-61055800	ZNF genes & repeats	NHLF	lung
33	chr7:61054400-61056000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
34	chr7:61054400-61056000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
35	chr7:61054400-61056000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
36	chr7:61054400-61056000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
37	chr7:61054600-61055800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
38	chr7:61054600-61055800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:61054600-61055800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
40	chr7:61054600-61055800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr7:61054600-61055800	ZNF genes & repeats	Aorta	Aorta
42	chr7:61054600-61055800	ZNF genes & repeats	Brain Angular Gyrus	brain
43	chr7:61054600-61055800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
44	chr7:61054600-61055800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
45	chr7:61054600-61055800	ZNF genes & repeats	K562	blood
46	chr7:61054800-61055200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
47	chr7:61054800-61055200	ZNF genes & repeats	HMEC	breast
48	chr7:61054800-61055800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:61054800-61055800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:61054800-61055800	ZNF genes & repeats	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links