Variant report
| Variant | nsv966819 |
|---|---|
| Chromosome Location | chr7:63846954-63851077 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF736-2 | chr7:63849266-63849519 | XLOC_006124 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RAB5C | miRNA target sites |
Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs182705135 | chr7:63849289-63849290 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs374850301 | chr7:63849307-63849308 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs546983781 | chr7:63849317-63849318 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs566708163 | chr7:63849402-63849403 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs539343289 | chr7:63849408-63849409 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs139774192 | chr7:63849432-63849433 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs373786580 | chr7:63849511-63849512 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs679375 | chr7:63849853-63849854 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 9 | rs192782788 | chr7:63849854-63849855 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs148718121 | chr7:63849859-63849860 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs182433903 | chr7:63849876-63849877 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs575585875 | chr7:63849896-63849897 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs114590479 | chr7:63849940-63849941 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs566543690 | chr7:63850611-63850612 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs538663453 | chr7:63850737-63850738 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs10277311 | chr7:63850742-63850743 | Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs151278714 | chr7:63850902-63850903 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs544473253 | chr7:63850974-63850975 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:74)
| Disease | PMID | Source |
|---|---|---|
| Wilms tumour | 21544195 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Seminomas | 18059402 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Autism | 19415332 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Malaria | 21533027 | CNVD |
| Melanoma | 18172304 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| head and neck squamous cell carcinoma | 19289630 | CNVD |
| Stenocardia | 21860640 | CNVD |
| Vasospasm | 21860640 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Autism | 22495311 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Williams-beuren syndrome | 22470819 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Cancer | 21183584 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Gastric cancer | 24379144 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Lissencephaly | 21572526 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Low-grade fibromyxoid sarcoma | 0 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Shwachman-Diamond syndrome | 22934832 | CNVD |
| Glioblastoma | 21080181 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Cutaneous malignant melanoma | 17690212 | CNVD |
| Leukemia | 17361228 | CNVD |
| Breast cancer | 16461572 | CNVD |
| Peripheral t-cell lymphoma | 19118030 | CNVD |
| Malignant melanoma | 17690212 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Schizophrenia | 21399695 | CNVD |
| Malignant fibrous histiocytomas | 21085701 | CNVD |
| Astrocytoma | 22246337 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Acute promyelocytic leukemia | 19109227 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Acute monocytic leukemia | 16498392 | CNVD |
| Prostate cancer | 16461572 | CNVD |
| Salivary gland tumor | 18059337 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:63849800-63850000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr7:63850600-63851000 | Active TSS | Fetal Heart | heart |
