Variant report
| Variant | nsv966828 |
|---|---|
| Chromosome Location | chr7:65120151-65163564 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs563422807 | chr7:65162602-65162603 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs573531597 | chr7:65162638-65162639 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs542625752 | chr7:65162679-65162680 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs2949235 | chr7:65162713-65162714 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs528764521 | chr7:65162738-65162739 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs186431078 | chr7:65162739-65162740 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs535295182 | chr7:65162742-65162743 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs565129958 | chr7:65162748-65162749 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs531170470 | chr7:65162766-65162767 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs550775291 | chr7:65162857-65162858 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs567763930 | chr7:65162941-65162942 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs536211330 | chr7:65163089-65163090 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs202181056 | chr7:65163096-65163097 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs547018519 | chr7:65163127-65163128 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs565702446 | chr7:65163194-65163195 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs566918052 | chr7:65163196-65163197 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs200521716 | chr7:65163212-65163213 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs558116987 | chr7:65163254-65163255 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs577738612 | chr7:65163370-65163371 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs201424637 | chr7:65163375-65163376 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs368734304 | chr7:65163473-65163474 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:77)
| Disease | PMID | Source |
|---|---|---|
| Wilms tumour | 21544195 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Seminomas | 18059402 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Autism | 19415332 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Malaria | 21533027 | CNVD |
| Melanoma | 18172304 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| head and neck squamous cell carcinoma | 19289630 | CNVD |
| Stenocardia | 21860640 | CNVD |
| Vasospasm | 21860640 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Autism | 22495311 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Williams-beuren syndrome | 22470819 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Cancer | 21183584 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Gastric cancer | 24379144 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Lissencephaly | 21572526 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Low-grade fibromyxoid sarcoma | 0 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Shwachman-Diamond syndrome | 22934832 | CNVD |
| Glioblastoma | 21080181 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Cutaneous malignant melanoma | 17690212 | CNVD |
| Leukemia | 17361228 | CNVD |
| Breast cancer | 16461572 | CNVD |
| Peripheral t-cell lymphoma | 19118030 | CNVD |
| Malignant melanoma | 17690212 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Schizophrenia | 21399695 | CNVD |
| Malignant fibrous histiocytomas | 21085701 | CNVD |
| Astrocytoma | 22246337 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Acute promyelocytic leukemia | 19109227 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Acute monocytic leukemia | 16498392 | CNVD |
| Prostate cancer | 16461572 | CNVD |
| Salivary gland tumor | 18059337 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:65162600-65163000 | Enhancers | HepG2 | liver |
| 2 | chr7:65163000-65163400 | Weak transcription | HepG2 | liver |
| 3 | chr7:65163400-65165200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 4 | chr7:65163400-65166200 | Enhancers | HepG2 | liver |
