Variant report

Variant	nsv966908
Chromosome Location	chr7:149368492-149384949
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:149383044..149384920-chr7:149411305..149413057,2	MCF-7	breast:
2	chr7:149378603..149380137-chr7:149473844..149476423,2	K562	blood:
3	chr7:149382826..149386025-chr7:149386520..149388195,3	K562	blood:
4	chr7:149377419..149380079-chr7:149485808..149488196,2	K562	blood:
5	chr7:149378899..149381569-chr7:149383297..149385041,2	K562	blood:
6	chr7:149380156..149381800-chr7:149385578..149389038,3	MCF-7	breast:
7	chr7:149375198..149378106-chr7:149380615..149382864,3	K562	blood:
8	chr7:149378899..149381569-chr7:149383297..149385041,2	K562	blood:
9	chr7:149381065..149382766-chr7:149385673..149387922,2	K562	blood:
10	chr7:149375198..149378106-chr7:149380615..149382864,3	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KRBA1-3	chr7:149372772-149373111	l_3504_chr7:149368636-149373275_testes
2	lnc-KRBA1-3	chr7:149369713-149370034	l_3504_chr7:149368636-149373275_testes
3	lnc-KRBA1-3	chr7:149368637-149368676	l_3504_chr7:149368636-149373275_testes
4	lnc-KRBA1-3	chr7:149371161-149371188	l_3504_chr7:149368636-149373275_testes
5	lnc-KRBA1-3	chr7:149368691-149368737	l_3504_chr7:149368636-149373275_testes
6	lnc-KRBA1-3	chr7:149371496-149371682	l_3504_chr7:149368636-149373275_testes
7	lnc-KRBA1-3	chr7:149373116-149373275	l_3504_chr7:149368636-149373275_testes
8	lnc-KRBA1-3	chr7:149369385-149369483	l_3504_chr7:149368636-149373275_testes

No data

Variant related genes	Relation type
ENSG00000197558	chromatin interactions
ENSG00000133619	chromatin interactions

Extended variants
information (count: 612 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:612 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116869964	chr7:149368513-149368514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542809462	chr7:149368519-149368520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs568250199	chr7:149368540-149368541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs114206326	chr7:149368712-149368713	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs569102308	chr7:149368751-149368752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs143446489	chr7:149368787-149368788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189802810	chr7:149368813-149368814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568625275	chr7:149368815-149368816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs542436825	chr7:149368853-149368854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs183076695	chr7:149368887-149368888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs147161951	chr7:149368891-149368892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs576781172	chr7:149368901-149368902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs545911618	chr7:149368933-149368934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs186392961	chr7:149368976-149368977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs60059008	chr7:149368977-149368978	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs191596982	chr7:149368988-149368989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs140451393	chr7:149368989-149368990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs527548801	chr7:149368998-149368999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs56989772	chr7:149368999-149369000	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs560275137	chr7:149369004-149369005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs532415214	chr7:149369007-149369008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552229100	chr7:149369017-149369018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149812834	chr7:149369043-149369044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs531706679	chr7:149369065-149369066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs548345681	chr7:149369129-149369130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs532660188	chr7:149369158-149369159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs568641385	chr7:149369162-149369163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62490623	chr7:149369200-149369201	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs112632603	chr7:149369201-149369202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs570330706	chr7:149369206-149369207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs539475452	chr7:149369225-149369226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs556210915	chr7:149369240-149369241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs576180843	chr7:149369259-149369260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs115508421	chr7:149369270-149369271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs555233714	chr7:149369279-149369280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs572247135	chr7:149369344-149369345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs144791463	chr7:149369358-149369359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs564430727	chr7:149369385-149369386	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs373471821	chr7:149369425-149369426	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs576809885	chr7:149369437-149369438	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs855741	chr7:149369469-149369470	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs562564230	chr7:149369477-149369478	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs530194735	chr7:149369478-149369479	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs548781109	chr7:149369486-149369487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs73725537	chr7:149369487-149369488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188779833	chr7:149369490-149369491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535333206	chr7:149369511-149369512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs55854501	chr7:149369527-149369528	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs540160455	chr7:149369551-149369552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs62490625	chr7:149369565-149369566	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149360200-149370400	Weak transcription	Placenta	Placenta
2	chr7:149369600-149369800	Bivalent Enhancer	HepG2	liver
3	chr7:149369800-149371200	Enhancers	HepG2	liver
4	chr7:149370400-149371200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:149370400-149373800	Enhancers	Placenta	Placenta
6	chr7:149370800-149371200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:149373800-149374000	Bivalent Enhancer	K562	blood
8	chr7:149374000-149374200	Bivalent/Poised TSS	K562	blood
9	chr7:149374000-149387600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:149376800-149378000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:149376800-149378200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:149376800-149378400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:149377000-149378200	Enhancers	Osteobl	bone
14	chr7:149377800-149378800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:149377800-149379600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:149377800-149379800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:149377800-149380600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:149378000-149379200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:149378200-149380200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:149378200-149380400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:149378200-149380600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:149378200-149380800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:149378200-149380800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:149378200-149381600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:149378200-149382200	Weak transcription	Osteobl	bone
26	chr7:149378400-149379400	Enhancers	H9 Cell Line	embryonic stem cell
27	chr7:149378400-149380000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr7:149378400-149380400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr7:149378400-149380400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:149378600-149380400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:149378800-149379000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:149379000-149379400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:149379200-149379600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:149379200-149381000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:149379400-149379600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:149379400-149380200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:149379400-149387600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr7:149379600-149380400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:149379800-149383000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr7:149380200-149380600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:149380200-149380600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr7:149380400-149380800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:149380400-149381600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr7:149380400-149382800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:149380400-149389400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:149380600-149380800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr7:149380600-149380800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:149380600-149382800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:149380600-149383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:149380800-149382800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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